Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g01159 ATGGTTCTGTCCAAAACAGCATCGGAGACGGACGTTTCTGTCCATTCAACCTTCGCCTCTCGCTATGTGCGCACAATTCTTCCCAGGTTCAAGATGGGAGAGCAATCAATCCCGAAGGAAGCGGCGTACCAGATCATAAACGACGAGCTGATGTTAGATGGAAATCCGAGGCTGAACCTGGCGTCGTTTGTGACTACGTGGATGGAGCCTGAATGTGACAAACTCATAATGGCTGCCATTAACAAAAACTATGTGGACATGGATGAGTATCCTGTCACCACTGAACTCCAGGCAACATTCAAACTTGTGTGCGTGCAGAACCGTTGCGTTAACATGATAGCTCACCTTTTCAATGCGCCACTCGAAGAGTCAGAACCTGCAGTTGGTGTTGGCACGGTTGGCTCATCCGAGGCCATAATGTTGGCTGGATTAGCATTCAAAAGGAGATGGCAGAATAGAAGGAAACAAGAAGGGAAGCCTTGTGATAGTCCCAATATCGTTACTGGTGCCAATGTTCAGGTCTGCTGGGAGAAATTTGCGAGGTACTTTGAAGTGGAGTTGAAAGAGGTGAAGCTGAGTGATGGATACTTTGTAATGGACCCTGAGAAAGCAGTGGAAATGGTGGATGAGAACACCATTTGTGTTGCTGCTATCCTTGGTTCCACTTTGAACGGAGAGTTTGAAGATGTCAAGCGCTTAAATGATCTCCTACTAGAAAAGAATCAGACAACTGGATGGGATACTCCAATTCATGTGGATGCAGCCAGTGGTGGATTCATTGCACCGTTTCTTTATCCAGAGCTTGAGTGGGACTTTCGGTTACCACTAGTGAAGAGCATCAATGTTAGTGGACACAAATATGGTCTAGTCTATGCTGGAATTGGTTGGGTCATTTGGAGAACCAAGGAAGACCTTCCTGAGGAACTCATTTTCCATATTAACTATCTCGGAGCTGATCAACCCACCTTCACCCTCAACTTCTCCAAAGGTTCTAGCCAAGTTATTGCCCAGTACTACCAACTAATTCGATTGGGTTTTGAGGGATACAAAATGGTGATGGAAAACTGCAGAGACAACATGGCAGTGCTTAAGGAAGGTCTAGAGAAAACTGAAAAGTTCGACATTGTGTCTAAAGAAATCGGTGTCCCATTGGTGGCCTTCACTTTGAAGGATCACAGCCACTTCAATGAGTTCCAAATCTCTGACCTGCTGAGGCGCTATGGATGGATAGTGCCAGCATACACTATGCCTCCGGATGCAGAACATGTCACAGTGCTTCGTGTTGTGGTTAGGGAGGACTTCTCTCGCACCCTTGCGGAGCGTCTTGTCACTGATCTCACCAAAGTGGTGCACGAGCTGGAGCTGCTTCCTGCTAGGGTAATCAGCAGCACCGTAACGACTGGAGAAGATGGTGAGGTCACTGAGGGAAAAGTATTGGTTGCCAAGAAGAGTGAATTAGAGACACAGAGGGCAATCACTTCAGCTTGGAAGAAGTTTGTGATGGAGAAGAAGAAGATGAACGGTGTTTGTTAG 1533 0.4671 MVLSKTASETDVSVHSTFASRYVRTILPRFKMGEQSIPKEAAYQIINDELMLDGNPRLNLASFVTTWMEPECDKLIMAAINKNYVDMDEYPVTTELQATFKLVCVQNRCVNMIAHLFNAPLEESEPAVGVGTVGSSEAIMLAGLAFKRRWQNRRKQEGKPCDSPNIVTGANVQVCWEKFARYFEVELKEVKLSDGYFVMDPEKAVEMVDENTICVAAILGSTLNGEFEDVKRLNDLLLEKNQTTGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVIWRTKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGFEGYKMVMENCRDNMAVLKEGLEKTEKFDIVSKEIGVPLVAFTLKDHSHFNEFQISDLLRRYGWIVPAYTMPPDAEHVTVLRVVVREDFSRTLAERLVTDLTKVVHELELLPARVISSTVTTGEDGEVTEGKVLVAKKSELETQRAITSAWKKFVMEKKKMNGVC 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g01159 510 SUPERFAMILY PLP-dependent transferases 15 453 IPR015424 -
Vimu1g01159 510 Pfam Pyridoxal-dependent decarboxylase conserved domain 37 390 IPR002129 GO:0016830|GO:0019752|GO:0030170
Vimu1g01159 510 NCBIfam glutamate decarboxylase 16 454 IPR010107 GO:0004351|GO:0006536|GO:0030170
Vimu1g01159 510 FunFam Glutamate decarboxylase 370 457 - -
Vimu1g01159 510 PANTHER GLUTAMATE DECARBOXYLASE 1 510 IPR010107 GO:0004351|GO:0006536|GO:0030170
Vimu1g01159 510 FunFam Glutamate decarboxylase 66 369 - -
Vimu1g01159 510 Gene3D - 370 457 - -
Vimu1g01159 510 Gene3D - 66 369 IPR015421 GO:0003824
Vimu1g01159 510 Gene3D - 1 65 - -
Vimu1g01159 510 FunFam Glutamate decarboxylase 1 65 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g01159 Vimu-Chr1 8908160 8913842 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g01159 1 510 Calmodulin-binding Proteins AT5G17330 81.213 0.0 867
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g01159 1 8908160 8913842 Vimu1g01159 1 8908160 8913842 ECH