Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g01108 ATGGCTACCGAAGAGGTTAATAAACCTCAGTCACTTCCTCCATACCCCGAGCTGATACTGAAAGCGATTGAAGCTCTGAGTGAACCAAGTGGATCCAGCAAATCAGCAATATCAAAGTACATAGAAGCGATCTATGGTGAGTTGCCAGATTCAACCGTTTTGGGGAATGAACTGAACAAACTGAAAGAGAGTGGAGAGCTTGTGTTCAATAAGAACAACTACATGAAAGCTGACCCAAGTGCCCCACCAAAGAGGGGCCGTGGAAGGCCACCAAAGCCAAAGGCCCCTGTGCCGCCAGGCACCGTCGTCTCCCCTCCGCGGCCAAGGGGTCGTCCCCCAAAGGACCCAAACGCGCCTCCGAAGTCTCCAAAGCCCAAGCCCACCCCTGGAAGTGGCAGGCCAAGGGGGAGGCCAAAGAAGATTCCTCGCTCTCCGACGGCGGCGTATCCGGCCGCCGTATCCAGCGGAAGGCCCAGGGGTAGGCCTCCAAAGGTGAAGCCTCAGTTGACAGAAATCTGTGGCAAGATACATTTAAAGATAATGGGACAACGAAGGAGGACCCTAGAGACTGAAAAAGGAGAAACTGGTAGTGATGATACATCTCCAGCGTGGTGTGAAGTCGTTGTTGTTTCCTTGGAGGGGGAAATCAGATGGTCTGGTTTGACCGGCAAGCCTAGTGCCTGTGTTATCTTTCCATCATATTAA 705 0.5248 MATEEVNKPQSLPPYPELILKAIEALSEPSGSSKSAISKYIEAIYGELPDSTVLGNELNKLKESGELVFNKNNYMKADPSAPPKRGRGRPPKPKAPVPPGTVVSPPRPRGRPPKDPNAPPKSPKPKPTPGSGRPRGRPKKIPRSPTAAYPAAVSSGRPRGRPPKVKPQLTEICGKIHLKIMGQRRRTLETEKGETGSDDTSPAWCEVVVVSLEGEIRWSGLTGKPSACVIFPSY 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g01108 234 MobiDBLite consensus disorder prediction 92 132 - -
Vimu1g01108 234 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 11 78 IPR005818 GO:0000786|GO:0003677|GO:0006334
Vimu1g01108 234 PANTHER HISTONE H1 7 167 - -
Vimu1g01108 234 SMART h15plus2 9 73 IPR005818 GO:0000786|GO:0003677|GO:0006334
Vimu1g01108 234 FunFam HMG-Y-related protein A 7 87 - -
Vimu1g01108 234 Pfam linker histone H1 and H5 family 13 71 IPR005818 GO:0000786|GO:0003677|GO:0006334
Vimu1g01108 234 MobiDBLite consensus disorder prediction 65 169 - -
Vimu1g01108 234 SUPERFAMILY "Winged helix" DNA-binding domain 8 85 IPR036390 -
Vimu1g01108 234 Gene3D - 7 94 IPR036388 -
Vimu1g01108 234 PRINTS AT-hook-like domain signature 84 94 IPR017956 GO:0003677
Vimu1g01108 234 PRINTS AT-hook-like domain signature 104 115 IPR017956 GO:0003677
Vimu1g01108 234 PRINTS AT-hook-like domain signature 130 140 IPR017956 GO:0003677
Vimu1g01108 234 PRINTS High mobility group protein (HMGY) signature 82 94 IPR000116 GO:0000785|GO:0003677|GO:0005634|GO:0006355
Vimu1g01108 234 PRINTS High mobility group protein (HMGY) signature 97 108 IPR000116 GO:0000785|GO:0003677|GO:0005634|GO:0006355
Vimu1g01108 234 PRINTS High mobility group protein (HMGY) signature 121 140 IPR000116 GO:0000785|GO:0003677|GO:0005634|GO:0006355
Vimu1g01108 234 PRINTS High mobility group protein (HMGY) signature 108 119 IPR000116 GO:0000785|GO:0003677|GO:0005634|GO:0006355
Vimu1g01108 234 SMART AT_hook_2 132 144 IPR017956 GO:0003677
Vimu1g01108 234 SMART AT_hook_2 84 96 IPR017956 GO:0003677
Vimu1g01108 234 SMART AT_hook_2 106 118 IPR017956 GO:0003677
Vimu1g01108 234 SMART AT_hook_2 156 168 IPR017956 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g01108 Vimu-Chr1 8370529 8371938 Proximal
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g01108 1 8370529 8371938 Vimu1g01108 1 8370529 8371938 ECH
Vimu6g01861 6 16800386 16809425 Vimu1g01108 1 8370529 8371938 PCT