Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g01104 ATGGCCACCGAAGAGGTTAATAAGCCTCAGTCACTTCCTCCATACCCCGAGCTGATACTGAAAGCGCTTGAAGCTCTGAATGAACCAAGTGGATCCAGCAAATCAGCAATATCGAAGTACATAGAAACGACCTATGGTGAGTTGCCAGATTCAACTGTTTTGGGAAATCAACTGAACAAGATGAAAGATAGTGGAGAACTTGTGTTCAGTAAGAACAACTACCTAAAGGCTGACCCAAGTGCCCCACCAAAGAGGGGCCGTGGAAGGCCACCAAAGCCAAAGGCCCCTGTGTCACCAGGCACCGTTGTGTCTCCTCCACGGCCAAGGGGTCGTCCCCCAAAGGACCCGAATGCTCCTCCAAAGTCCCCAAAGCCTAAGCCCACCCCTGGAAGTGGCAGGCCAAGGGGTAGACCAAGGAAAATTCCTCGCTCACCAGCGGCGACGGTGGCGCCGGCCGCCGTCTCCAGCGGAAGGCCTAGGGGTAGGCCTCCTAAGGTAAAGCCTCAGTTGAGAGAAGTGGGTGTTGAGTTATAG 534 0.5393 MATEEVNKPQSLPPYPELILKALEALNEPSGSSKSAISKYIETTYGELPDSTVLGNQLNKMKDSGELVFSKNNYLKADPSAPPKRGRGRPPKPKAPVSPGTVVSPPRPRGRPPKDPNAPPKSPKPKPTPGSGRPRGRPRKIPRSPAATVAPAAVSSGRPRGRPPKVKPQLREVGVEL 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g01104 177 MobiDBLite consensus disorder prediction 92 132 - -
Vimu1g01104 177 PRINTS High mobility group protein (HMGY) signature 97 108 IPR000116 GO:0000785|GO:0003677|GO:0005634|GO:0006355
Vimu1g01104 177 PRINTS High mobility group protein (HMGY) signature 108 119 IPR000116 GO:0000785|GO:0003677|GO:0005634|GO:0006355
Vimu1g01104 177 PRINTS High mobility group protein (HMGY) signature 82 94 IPR000116 GO:0000785|GO:0003677|GO:0005634|GO:0006355
Vimu1g01104 177 PRINTS High mobility group protein (HMGY) signature 121 140 IPR000116 GO:0000785|GO:0003677|GO:0005634|GO:0006355
Vimu1g01104 177 SMART h15plus2 9 73 IPR005818 GO:0000786|GO:0003677|GO:0006334
Vimu1g01104 177 FunFam HMG-Y-related protein A 7 87 - -
Vimu1g01104 177 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 11 78 IPR005818 GO:0000786|GO:0003677|GO:0006334
Vimu1g01104 177 MobiDBLite consensus disorder prediction 70 177 - -
Vimu1g01104 177 Gene3D - 7 94 IPR036388 -
Vimu1g01104 177 Pfam linker histone H1 and H5 family 13 71 IPR005818 GO:0000786|GO:0003677|GO:0006334
Vimu1g01104 177 PANTHER HISTONE H1 7 168 - -
Vimu1g01104 177 SMART AT_hook_2 157 169 IPR017956 GO:0003677
Vimu1g01104 177 SMART AT_hook_2 84 96 IPR017956 GO:0003677
Vimu1g01104 177 SMART AT_hook_2 106 118 IPR017956 GO:0003677
Vimu1g01104 177 SMART AT_hook_2 132 144 IPR017956 GO:0003677
Vimu1g01104 177 PRINTS AT-hook-like domain signature 84 94 IPR017956 GO:0003677
Vimu1g01104 177 PRINTS AT-hook-like domain signature 130 140 IPR017956 GO:0003677
Vimu1g01104 177 PRINTS AT-hook-like domain signature 104 115 IPR017956 GO:0003677
Vimu1g01104 177 SUPERFAMILY "Winged helix" DNA-binding domain 8 85 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g01104 Vimu-Chr1 8303316 8304191 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g01104 1 8303316 8304191 Vimu6g01861 6 16800386 16809425 PCT