Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g01103 ATGGGAGATGCGAGTGAAGTGAAGGGGGAATGTTCAGGCAGTGGGAAGGGGAAGAAGATGTTTGAGGAAGAAGAAAATGAAGACAAGTTGTTGGCAGGCGTAGGATACAAAGTGTGTTCCTCGGACATGGTTGACGTGGCACATAAGCTCGACCAATTGGAGATGGTAATGGAGGAAGATGGAATTTCCCATCTCGCCTCTAACACTGTGCATTACGACCCGACCGATCTTTACGGTTGGGTCCAGAACATTCTTAATAACGCGCCCAATCACCCCATCACCACCAACAGCAACAACGCTATCATTCCATCGCCGTTAACCCCTGTCCCCGAGAACGATCTAACAGCGATTCCATTGCCATACATCGAAGCGTATCCACAAACAGAAAATCAGAATTGCCACAAGCGATTCAAGAGTTCTTCATCTCCGTTGTGGCCCGCGATTTCATCGGACAACGTGCTTCCGGTGGTTCTGGTGGAGGAAGCCGGCGTGTATCTCGTCCACGCACTCATGGCCTGCGCGGAGGCCATTCAATTAGGAAACGCAAGCCTCGCGTCAAGCCTCGTGAAGCATGCAGGAACCCTCGCTGTGTCGCAAGGAGGTTCAATGGGGAAGGTTGCATCGTTCTTCGCTCAAGCTCTCGCTAGAAGAATCTATGGATTCTATCCTTACGAGACTCTAGACTCTTCCTACTCCGACATGCTTCACACACATTTCTACGAATCGAGCCCGTACCTGAAATTCGCGCACTTCACGGCGAACCACGCAATCCTCGAGGCATTCGCCACCGCGGACACGGTGCATGTCATCGATTTTGGCCTGAAGCAGGGGTTGCAGTGGCCGGCGTTCATGCAAGCACTAGCGGTCCGTCCGGGAGGTCCGCCAGCGTTCCGCCTCAGCGGGATCGGACCACCGCGGCTCGACGACCCCGATTCCGACTCGCTGAGTCAGGTCGGCTTGAAACTGGCGGAACTCGCTCGAAAAATTAGGATTCAATTCGAGTTCCGCGGATTCGTGTGTAACAGTTTAGCTGATCTAGATCCGTCCGTGCTCGACATCCGAGAAGGAGAATTCGTCGCGGTTAACTCTATCTTCGAGCTTCACCGCTTGCTGGCGCGACCTGTAGACATTGAAAAGGTGTTAGCCACGGTTAAGAGGATTAAACCTGAGATTGTTACCGTGGTGGAGCAAGAAGCGAATCACAACGGTCCGGTTTTTCTGGAGCGGTTCACGGAGGCATTGTACTATTACTCTAGTTTGTTTGACTCGATGGAGGGATCGGTGGCGGCGCCGAATGAACAGGCGTTGGTGATGGCGGAGATGTACTTGGGGAGGCAGATATGTAACGTTGTGGCGTGTGAGGGGGAAGAACGCGTGGAGAGGCACGAAACGCTGGGTCAGTGGAGAGCGCGGCTCGGTTTGGGCGGGTTGGAACCGGTTCGCATGGGTTCGAACGCGTTCAGACAAGCGAGGATGTTACTGGGCCTATACGCTGAGGGGGGAGAAGGGTACAGAGTGGAAGAAAACAATGGGTGCCTCTTGCTCGGGTGGCACACCAGGCCACTCGTTGCCTCGTCCGCGTGGAGACTCGCGCCCAATGGTTTGCACCCAGTTAGAGATCAGAATGAGATGAACCAAGATTCCCGATACTGTTACGTCAAAGAATAG 1668 0.5372 MGDASEVKGECSGSGKGKKMFEEEENEDKLLAGVGYKVCSSDMVDVAHKLDQLEMVMEEDGISHLASNTVHYDPTDLYGWVQNILNNAPNHPITTNSNNAIIPSPLTPVPENDLTAIPLPYIEAYPQTENQNCHKRFKSSSSPLWPAISSDNVLPVVLVEEAGVYLVHALMACAEAIQLGNASLASSLVKHAGTLAVSQGGSMGKVASFFAQALARRIYGFYPYETLDSSYSDMLHTHFYESSPYLKFAHFTANHAILEAFATADTVHVIDFGLKQGLQWPAFMQALAVRPGGPPAFRLSGIGPPRLDDPDSDSLSQVGLKLAELARKIRIQFEFRGFVCNSLADLDPSVLDIREGEFVAVNSIFELHRLLARPVDIEKVLATVKRIKPEIVTVVEQEANHNGPVFLERFTEALYYYSSLFDSMEGSVAAPNEQALVMAEMYLGRQICNVVACEGEERVERHETLGQWRARLGLGGLEPVRMGSNAFRQARMLLGLYAEGGEGYRVEENNGCLLLGWHTRPLVASSAWRLAPNGLHPVRDQNEMNQDSRYCYVKE 555
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g01103 555 Pfam Transcriptional regulator DELLA protein N terminal 28 87 IPR021914 -
Vimu1g01103 555 ProSiteProfiles GRAS family profile. 157 529 IPR005202 -
Vimu1g01103 555 MobiDBLite consensus disorder prediction 1 22 - -
Vimu1g01103 555 SMART DELLA_2 28 98 - -
Vimu1g01103 555 Gene3D - 26 87 IPR038088 -
Vimu1g01103 555 Pfam GRAS domain family 166 529 IPR005202 -
Vimu1g01103 555 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 132 524 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g01103 Vimu-Chr1 8289571 8291238 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g01103 20 531 GRAS Transcription Factor Family AT2G01570 55.793 0.0 584
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Vimu1g01103 GRAS 3.3e-129 CL0063
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g01103 1 8289571 8291238 Vimu1g01103 1 8289571 8291238 ECH
Vimu6g01860 6 16784045 16785728 Vimu1g01103 1 8289571 8291238 PCT