Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g00671 ATGATGATGTTCGAGGACATTGGGTTTTGTGGCGATTTGGATTTGTTGAGTTGTCCCCTTGGAGACGATGATGTTGTTGCTGTGAGACAAGCGGATCCAGATCCTGTGGTTGAGGATGATTACAGTGATGAAGAAATTGATGTGGATGAGCTGGAGAAACGTATGTGGAGGGACAAAGTGCGGCACAAACGATTGAAAGAACAACAGAAGGCAAAGGAAGGGACAGATGCAGTGAAGCAAAGGCAATCTCAAGAGCAAGCTAGGAGGAAAAAGATGTCAAGAGCTCAGGATGGAATACTAAAGTACATGCTGAAGATGATGGAGGTCTGCAAAGCACAAGGGTTTGTTTATGGCATAATTCCTGAGAAAGGGAAGCCAGTGACTGGAGCATCAGACAATCTTCGCGAATGGTGGAAGGACAAGGTGAGGTTTGATCGGAATGGCCCTGCTGCAATAGCAAAGTATCAGGCTGATAATGCAATTCCAGGGAAGAATGATGGTTGCAATTCCATTGGTCCAACTCCACACACATTACAGGAGTTACAGGACACAACACTGGGTTCTCTTCTGTCAGCACTTATGCAGCACTGTGATCCTCCTCAGAGAAGGTTCCCATTAGAGAAGGGTGTTCCTCCACCATGGTGGCCCACTGGGAATGAAGTATGGTGGCCTCAAATTGGTCTTCCCAAAGATCAAGGCCATCCACCTTACAAGAAACCTCATGACCTCAAGAAGGCATGGAAGGTTGGTGTTCTTACTGCTGTCATCAAGCACATGTCTCCTGATATAGCCAAGATTCGGAAGCTTGTGAGACAGTCTAAATGCCTTCAGGACAAAATGACAGCAAAGGAGAGTGCAACATGGCTTGCCATCATCAACCAAGAGGAAGCCTTGGCTCGAGAGCTTTATCCTGATTATTGCCCCCCATTTTCCTCTGGTGCAGGTAATGGCTCCATGGTCATCAACGATTGCAGTGAGTATGATGTTGATGGGGCTGAGGAAGAACCAAACTTTGATGTGGAGGACCGGAAGCCAGATCCTCTTCATCCATCTAATATTGGGATGGAGAGAATCACCGGAAGACTACCACTACAAATTTCTCATCCATTTAAGGGAGATGTTGTCACAAACCTTGATTTCATCCGGAAGAGGAAGATTCCTGGTGACTTCAACCTCATGATGGATCCCAAAATCTATACTTGTGAGCATCCTCAATGCCCTTACAATGAACCTCGCCTTGGTTTCCCTGACAGGTCGGCTAGGGACAATCATCAACTGAACTGTGCATACAGAAACAGTGCTTCAGATTATGGTGGTGGTTCCAACTTCCATGATGCTGAGGTTAAACCAGTCATATTCCCTCAGTCTTTTGTTCAACCCAACACTACATCCCAGGCTGCAAATGTGGTTCAACCTTCATTTGGTGTATCTGGGCTTGGAGTTCCGGAAGATGGGCAAAAAATGATAAATGACCTCATGACAATATATGATACAAATGTTATAGGAAACAATAACTTAAGTTCCAACAACTTTGTAGCCGCAGAAAACCAAAACTTTTCTCAGACCATGTTACAGCAACAGCAACAGGACAGTCGTCGTGACAATTATTTCACTGGCCAAGGAATGGTGACAGAAGGAAATTTCTTTGCACGTGAGGAAGGACAATTTGAGAGGTTCAAAGCCATGAACATGAACGCCCCTTTTGACACCAACCACATGTTGTTTAGCCCCCAGTGTGATTTGTCGTCTTTTGATTTTAAGGATATACAAGGGGGAGGAATGGATACCGGTCACAGACAGCAGCAAGAGGTTTCAATTTGGTTCCAGTGA 1830 0.453 MMMFEDIGFCGDLDLLSCPLGDDDVVAVRQADPDPVVEDDYSDEEIDVDELEKRMWRDKVRHKRLKEQQKAKEGTDAVKQRQSQEQARRKKMSRAQDGILKYMLKMMEVCKAQGFVYGIIPEKGKPVTGASDNLREWWKDKVRFDRNGPAAIAKYQADNAIPGKNDGCNSIGPTPHTLQELQDTTLGSLLSALMQHCDPPQRRFPLEKGVPPPWWPTGNEVWWPQIGLPKDQGHPPYKKPHDLKKAWKVGVLTAVIKHMSPDIAKIRKLVRQSKCLQDKMTAKESATWLAIINQEEALARELYPDYCPPFSSGAGNGSMVINDCSEYDVDGAEEEPNFDVEDRKPDPLHPSNIGMERITGRLPLQISHPFKGDVVTNLDFIRKRKIPGDFNLMMDPKIYTCEHPQCPYNEPRLGFPDRSARDNHQLNCAYRNSASDYGGGSNFHDAEVKPVIFPQSFVQPNTTSQAANVVQPSFGVSGLGVPEDGQKMINDLMTIYDTNVIGNNNLSSNNFVAAENQNFSQTMLQQQQQDSRRDNYFTGQGMVTEGNFFAREEGQFERFKAMNMNAPFDTNHMLFSPQCDLSSFDFKDIQGGGMDTGHRQQQEVSIWFQ 609
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g00671 609 MobiDBLite consensus disorder prediction 61 92 - -
Vimu1g00671 609 FunFam Ethylene insensitive 3-like 1 169 306 - -
Vimu1g00671 609 MobiDBLite consensus disorder prediction 67 92 - -
Vimu1g00671 609 FunFam Ethylene insensitive 3-like 1 81 159 - -
Vimu1g00671 609 PANTHER ETHYLENE INSENSITIVE 3-LIKE 2 PROTEIN 31 561 IPR006957 GO:0003700|GO:0005634
Vimu1g00671 609 SUPERFAMILY DNA-binding domain of EIN3-like 175 299 IPR023278 GO:0003700|GO:0005634
Vimu1g00671 609 Gene3D - 81 158 IPR023278 GO:0003700|GO:0005634
Vimu1g00671 609 Gene3D - 173 306 IPR023278 GO:0003700|GO:0005634
Vimu1g00671 609 Pfam Ethylene insensitive 3 49 296 IPR047091 GO:0003700
Vimu1g00671 609 Coils Coil 48 68 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g00671 Vimu-Chr1 4318623 4320452 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g00671 2 608 EIL Transcription Factor Family AT3G20770 58.308 0.0 697
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF EIL Vimu1g00671 EIN3 4.5e-129 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu2g02664 2 23341013 23345098 Vimu1g00671 1 4318623 4320452 PCT