Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g04930 AGGAGGGAGACAGTGATTGGAGGTACAACAGTCTCAAACATGGATGAATTACTCGGCCTTCTAAGAATTCACGTCAAGCGTGGCGTCAACCTCGCCATTCGCGATGTCAGCACCAGCGATCCATACGTCGTCGTTAAGATGGATAAACAGAGGCTCAAGACTCGTGTGATTAAAAAGGACATTAATCCTGAGTGGAACGAAGAGCTTACGCTTTCTGTGACAGATCCCTCTGTTCCAGTGATACTGACTGTGTATGATCATGACACTTTCTCCATGGATGACAAAATGGGAGATGCGGAATTGGATATCTCACCATATTTAGAAGCCGTGAAGATGCAGGTGGAAGATCTTCCGAATGGAACTATAATCACGAGAATACATCCGTGTAGAACAAACTGCCTGGCGGAGGAAAGTTGCGTGGTTTTTGAGAATGGTAAAGTGCTGCAAGATGTTGTTCTAAGACTAAGACACGTGGAAAGCGGTGAGCTGGAACTTCAATTGGAATGGATTAATCTTCCTGGGGCCAAGGGATTGTGA 537 0.4562 RRETVIGGTTVSNMDELLGLLRIHVKRGVNLAIRDVSTSDPYVVVKMDKQRLKTRVIKKDINPEWNEELTLSVTDPSVPVILTVYDHDTFSMDDKMGDAELDISPYLEAVKMQVEDLPNGTIITRIHPCRTNCLAEESCVVFENGKVLQDVVLRLRHVESGELELQLEWINLPGAKGL 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g04930 178 ProSiteProfiles C2 domain profile. 2 117 IPR000008 -
Vimu11g04930 178 Pfam C2 domain 19 105 IPR000008 -
Vimu11g04930 178 Gene3D C2 domain 15 176 IPR035892 -
Vimu11g04930 178 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 19 163 IPR035892 -
Vimu11g04930 178 PRINTS C2 domain signature 80 88 IPR000008 -
Vimu11g04930 178 PRINTS C2 domain signature 35 47 IPR000008 -
Vimu11g04930 178 PRINTS C2 domain signature 59 72 IPR000008 -
Vimu11g04930 178 CDD C2_ArfGAP 18 161 - -
Vimu11g04930 178 PANTHER PROTEIN C2-DOMAIN ABA-RELATED 4 16 176 IPR044562 -
Vimu11g04930 178 SMART C2_3c 20 115 IPR000008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g04930 Vimu-Chr11 68800454 68801145 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g04930 51 178 C2H2 Transcription Factor Family AT1G70790 58.462 3.56e-52 162
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g04930 11 68800454 68801145 Vimu8g01637 8 22217366 22219490 PCT