Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g04750 ATGGAAGGAATCCTTCTATTTCTACTCTCCTGGCCTGCATCTGCATACCAAAAAATGAGAAATTCTTTGCAGTTTGTTTGGCCTGGGATCTTGTGTTTGATGTTACTGAGTTTTGAATATGAAGTTGAAACAAAGTCCACCATTGAAGCATGCAATTCCTCAGATTCATGCCCCTCTCTCCTCTCTTATCTCTTGCCATGGGACTCCAAAGTATCAGAAATCGCGACTCGGTTCCACGTAAACGCCTCTGATATCTTGGCGTCCAACTCTCTCTTCCCCATAACATCATCAAGTGCACACCAAATCCTGAGGGCCAAAACGTTTGTCAAAATACCCATCTTCTGCTCTTGTGTGGATGGCATCCGAAGGTCCATGTCAACCATTTACACTGTTCGTGCAGCAGACACAGCTGCCTCCATATCAGAAGGTTATGGTGGGTTGGTCAGTGGTGAACAAATCAAGATTCTTAACAGCATCAATGGCAGCAACCCCTTGAGGAATGGAGACACCCTTGTTATTCCACTGCCATGCACATGTTTTAACAACGTTAACAATGGGGCAACCGCTGTTTACATGTCATATGTTGTGCAGAGAAAAGAGAGCCTGAGCAGCATAGCAGCAAAGTTTGGTACAACTATTTCGGACTTGAAAGCTGTCAATGGCTTTTCGGAACCTACGGTAGATCCTGGAGACATTATATCTCTTCCCATTGCAGCATGTTCATCAGCAACCTTGAAATGGTACGATGAGAGTATGATAGTCCCAAATGGCTCATATACATTAACTGCCAGCAACTGCATCAAATGCAGTTGCCAACCAATGGATATTACGATGCGATGCGTTCCTTCTGGGCTAGCTGTTCCCTGCTATAACTTACGTTGCAAACAATCCAATCTTATTATTGGCAGTGAATGTGTGGAGCATTCAGAAACAGCTTGCAATGTGATCCAATGTGTTTACCGTGGCCACAGGGGTGGAAAAATTCTGAGTAGTATGAAGAACTCTTCTTACCTCCAGTGCCCTGATAATGTCTGTCACAGACGACCATCATGTCGGCCTTTCTCAGCATATTCTGAAGACCCATTTGGTATGTCTCCGAAGACATCCTCCTCCTTGCCACTGCCAGTTTCTAAAGCGTCTCAGAAGACTAGTGCCTTTAATGGAAGGCTTGCTCGATTTTTAATCAATGTGCTGCAAATATTCTTATTTTTAAAGTTTATCCTTTATTTTCTGATTTGA 1239 0.4358 MEGILLFLLSWPASAYQKMRNSLQFVWPGILCLMLLSFEYEVETKSTIEACNSSDSCPSLLSYLLPWDSKVSEIATRFHVNASDILASNSLFPITSSSAHQILRAKTFVKIPIFCSCVDGIRRSMSTIYTVRAADTAASISEGYGGLVSGEQIKILNSINGSNPLRNGDTLVIPLPCTCFNNVNNGATAVYMSYVVQRKESLSSIAAKFGTTISDLKAVNGFSEPTVDPGDIISLPIAACSSATLKWYDESMIVPNGSYTLTASNCIKCSCQPMDITMRCVPSGLAVPCYNLRCKQSNLIIGSECVEHSETACNVIQCVYRGHRGGKILSSMKNSSYLQCPDNVCHRRPSCRPFSAYSEDPFGMSPKTSSSLPLPVSKASQKTSAFNGRLARFLINVLQIFLFLKFILYFLI 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g04750 412 ProSiteProfiles LysM domain profile. 127 173 IPR018392 -
Vimu11g04750 412 CDD LysM 193 235 IPR018392 -
Vimu11g04750 412 SUPERFAMILY LysM domain 192 236 IPR036779 -
Vimu11g04750 412 ProSiteProfiles LysM domain profile. 192 235 IPR018392 -
Vimu11g04750 412 PANTHER LYSM DOMAIN-CONTAINING GPI-ANCHORED PROTEIN 2 40 343 - -
Vimu11g04750 412 Pfam LysM domain 194 236 IPR018392 -
Vimu11g04750 412 Pfam LysM domain 129 174 IPR018392 -
Vimu11g04750 412 Gene3D LysM domain 185 244 IPR036779 -
Vimu11g04750 412 Gene3D LysM domain 121 184 IPR036779 -
Vimu11g04750 412 SMART LysM_2 193 236 IPR018392 -
Vimu11g04750 412 SMART LysM_2 128 174 IPR018392 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g04750 Vimu-Chr11 67678176 67681462 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g04750 37 341 LysM Receptor-like Protein (LYPs) Gene Family AT1G21880 44.951 1.27e-84 263
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g04750 - - vra:106767878 788.489
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g04750 11 67678176 67681462 Vimu11g04750 11 67678176 67681462 ECH