Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g03618 ATGGGAAGAGTCATGGAAAAACCAACCCAAGATCTTCTTCACCAGCAGCAACAAGCCCTCAAGTGCCCTCGCTGCGACTCTTCAAACACCAAGTTCTGCTACTACAACAACTACAGTTTGTCACAGCCCAGGCACTTCTGCAAAGCCTGCAAGAGATACTGGACCAGAGGTGGAACTCTCAGAAACGTTCCCGTTGGTGGTGGCTGCAGGAAAAACAAGCGTATCAAACGTCCAAACGGTGACGCCTCTCCTCCTTCTTCCTCCACTCCTACCTCCAATTCAAATCCTCCTTCACTGCCCCACATCCCTTCTACTTCAACCGCAAACCATGTCAGTGTAAACCCTTTGTTTTATGGCCTACCCAATAGTAACGTTTGTGATGTCATGGATGTTCCTTTCCCAAGGTTTAATCTTCACTCTCAGCTGAATGCCCTTGGGTTAGGTTTTTCATCCGGGGTTAACGTTATCTCAACCGAACCCGGTGATAATGGGTTTAGTGCTACTACTACCAATACTACTTCGAATACTAACAACTTTCTTTCTGCTTATAATTCCATCTTTGGTTCTTCTTCCTCCTCCACTTGTGCACCCACCACTCCTGTTATGGCTTCCTTGCTGAGTTCCACTCTCCTGCAACAGAAGTTTATCGGTGCTGCTGGGGTGAAGGGTGATCATGTTGGCAACGGTTTCCAGGGTTTAGCACCGCTACAAGGGTTGCAAATGGAAGGGAGTAATAATATTAGCTCAAAAGAAGTGAAAGCTGAAGGACCAAACAGGTTGGAGTTGGAGTGGAGTAATAGCAACAATAACAATGGTGGTGGCGGTGCTTGTCAAAACCAGATGGAGCATGTGGGCTTGTCTGATCCTAATTCGCTTTATTGGAACACTGCAACCAGTTTGAGTGCTTGGAGTGATCAACCTAACTTTGGTCCTTCGGTCACTTCTCTGATCTAG 954 0.4686 MGRVMEKPTQDLLHQQQQALKCPRCDSSNTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRNVPVGGGCRKNKRIKRPNGDASPPSSSTPTSNSNPPSLPHIPSTSTANHVSVNPLFYGLPNSNVCDVMDVPFPRFNLHSQLNALGLGFSSGVNVISTEPGDNGFSATTTNTTSNTNNFLSAYNSIFGSSSSSTCAPTTPVMASLLSSTLLQQKFIGAAGVKGDHVGNGFQGLAPLQGLQMEGSNNISSKEVKAEGPNRLELEWSNSNNNNGGGGACQNQMEHVGLSDPNSLYWNTATSLSAWSDQPNFGPSVTSLI 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g03618 317 ProSiteProfiles Zinc finger Dof-type profile. 20 74 IPR003851 GO:0003677|GO:0006355
Vimu11g03618 317 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 14 199 IPR045174 GO:0003700|GO:0006355
Vimu11g03618 317 Pfam Dof domain, zinc finger 18 74 IPR003851 GO:0003677|GO:0006355
Vimu11g03618 317 MobiDBLite consensus disorder prediction 81 106 - -
Vimu11g03618 317 ProSitePatterns Zinc finger Dof-type signature. 22 58 IPR003851 GO:0003677|GO:0006355
Vimu11g03618 317 MobiDBLite consensus disorder prediction 65 106 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g03618 Vimu-Chr11 58065554 58066507 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g03618 20 120 C2C2-Dof Transcription Factor Family AT1G28310 71.569 5.38e-40 141
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Vimu11g03618 zf-Dof 1.4e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g03618 - - vum:124826825 590.497
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g03618 11 58065554 58066507 Vimu11g03618 11 58065554 58066507 ECH
Vimu11g03618 11 58065554 58066507 Vimu2g00674 2 4048797 4050218 PCT