Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g02633 ATGGAGAATGTTCTGGGTCTCATCAAACTTCGTATAAAAAAAGGCTCTAATCTCAAAGCTTGCGACACTCGTACCAGTGACCCTTATGTCTTTGTCACCATGGCCGAACAGCAACTGAGAACTAGTGTTGCAAAAGATACCTTAAATCCTGAGTGGAATGAAGAACTGACCCTTTATGTAAAAGATGTTAACATTCCAATACTTGTGACAGTTACAGACAAAGACACTTTCACGCCAGATGACAACATGGGTGATGCAGAAATAGACTTAAAGCCATATCTTCAGTGTGTGAAGATGGGGTTAAGAGATATGGCAGAGGGTCACATAGTGAAGCAGATTCAACCAGATAGGACTAACTGCCTTTCTGAAGGCAGCAACTGCATATGGAAAAATGATAAACTCATCCAAGAGATGACTTTGAGATTGAGAAATGCCAAGCATGGGGAAATAACTGTGGAAATTGGGTGGGTTACTCTTCCAGATTCAAAAGGCTTATCACAAGTTCAGTTTTAG 513 0.4074 MENVLGLIKLRIKKGSNLKACDTRTSDPYVFVTMAEQQLRTSVAKDTLNPEWNEELTLYVKDVNIPILVTVTDKDTFTPDDNMGDAEIDLKPYLQCVKMGLRDMAEGHIVKQIQPDRTNCLSEGSNCIWKNDKLIQEMTLRLRNAKHGEITVEIGWVTLPDSKGLSQVQF 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g02633 170 PANTHER PROTEIN C2-DOMAIN ABA-RELATED 4 3 163 IPR044562 -
Vimu11g02633 170 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 2 100 IPR035892 -
Vimu11g02633 170 SMART C2_3c 7 102 IPR000008 -
Vimu11g02633 170 Gene3D C2 domain 3 167 IPR035892 -
Vimu11g02633 170 Pfam C2 domain 7 92 IPR000008 -
Vimu11g02633 170 ProSiteProfiles C2 domain profile. 1 103 IPR000008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g02633 Vimu-Chr11 46729726 46731103 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g02633 38 167 C2H2 Transcription Factor Family AT1G70790 48.485 3.65e-40 131
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g02633 11 46729726 46731103 Vimu11g02633 11 46729726 46731103 ECH
Vimu11g02633 11 46729726 46731103 Vimu8g01637 8 22217366 22219490 ECH
Vimu11g02633 11 46729726 46731103 Vimu6g01856 6 16746894 16748803 ECH