Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g02624 ATGTCGGATTCTTATGCTAGTACCTTTCACTCTCCCACTCCAAACGTCACCCATGCTACCCCCAAAATCACCACATTATGCTCAATAGCTCAACCTTATTGTATTTGCACTCACTGTAACCACATCCTCTCCTTCAACCACCATGTTGGTAATGCAACAGAGGAAGGGACAAATAACACAGGGTCCCATGTTCAGTCCCAGCAAAGCACGAGGTGGAGTCCAACGCCAGTTCAGTTACTGGTCCTTGAGGAATTGTATAGGCAAGGCACTAAAACACCATCAGCTGAACAGATTCAGCAAATAGCTTCACAGTTGCGCCAGTTTGGGAAGATTGAAGGGAAGAACGTGTTCTACTGGTTCCAGAATCACAAGGCGAGAGAGAGACAGAAGAGGCGCCGGAGGGAGATGGAGGAAAATAATGCTGCTTCTTCTAGCGAAGGGTTGAAAGAGACAGGTTGTGGAGTTAAAGAGACAAAGAAGTGGGCATCCACTTCAAACTGCAGTCGACATGCAGAGGAATCTGCCGCACTGGATATAGCAGAAAAGGGCTCTAATGGGTGGACTCAGTTTGAGGAGAGAGGCATACAAGTTTTGAGGAGAAACATATCAGAAAGAAGGTTGCAATTGCAAGATAACATGGAAATTCCTTGTTTCCCTCCCACTACTATGGCAGCAGCTCTCGCAACCTCACACAGAACACTTAGCACACAACTTTTAATCCCTCAAAGTTATAACAGAGAAAGTTTAAACTACTATGATGGAGAAAATGCAGATCCTCGAACCCTCGACCTATTTCCACATAAGAATGATGACCAAGATGGCATATGTCTTGCTGAGAGGAAATCCATGTTCTGTGCCAGTGCTTCTATGGACACTGATATCACCTCCAGCCAGTTTTTTGAGTTTCTTCCTTTAAGAAACTGA 924 0.4502 MSDSYASTFHSPTPNVTHATPKITTLCSIAQPYCICTHCNHILSFNHHVGNATEEGTNNTGSHVQSQQSTRWSPTPVQLLVLEELYRQGTKTPSAEQIQQIASQLRQFGKIEGKNVFYWFQNHKARERQKRRRREMEENNAASSSEGLKETGCGVKETKKWASTSNCSRHAEESAALDIAEKGSNGWTQFEERGIQVLRRNISERRLQLQDNMEIPCFPPTTMAAALATSHRTLSTQLLIPQSYNRESLNYYDGENADPRTLDLFPHKNDDQDGICLAERKSMFCASASMDTDITSSQFFEFLPLRN 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g02624 307 Gene3D - 53 144 - -
Vimu11g02624 307 SMART HOX_1 67 134 IPR001356 GO:0003677
Vimu11g02624 307 MobiDBLite consensus disorder prediction 127 150 - -
Vimu11g02624 307 SUPERFAMILY Homeodomain-like 63 133 IPR009057 -
Vimu11g02624 307 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 53 301 IPR044555 GO:0003700|GO:0099402
Vimu11g02624 307 ProSiteProfiles 'Homeobox' domain profile. 65 130 IPR001356 GO:0003677
Vimu11g02624 307 Coils Coil 126 146 - -
Vimu11g02624 307 Pfam Homeodomain 69 129 IPR001356 GO:0003677
Vimu11g02624 307 MobiDBLite consensus disorder prediction 54 73 - -
Vimu11g02624 307 CDD homeodomain 70 125 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g02624 Vimu-Chr11 46503713 46505941 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g02624 58 307 Wox Gene Family AT3G18010 32.787 1.02e-35 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Vimu11g02624 Homeodomain 3.7e-19 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g02624 11 46503713 46505941 Vimu11g02624 11 46503713 46505941 ECH