Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g02620 ATGGCAAAGCGTTTGATTCCCACCTTCAATCGCATTCTCGTAGAGAAAATTGTTCCCCCTTCCAAGACCAGCGCTGGCATTCTTCTCCCTGAGAAGTCCTCCCAGCTTAATTCCGGTAAGGTGATAGCGGTTGGTCCTGGATCACGAGACAAGGCAGGGAACTTCATCCCCGTGTCGGTCAAGGAAGGTGATCGTGTTCTCTTGCCTGAGTACGGTGGCACGCAAATCAAGCTCGACGACAAAGAGTATGTGTTGTTTTGGATCTGTTTTCTTCCTCTGGTTGATTTTGAAGAGAAGAAAGTGGAGAGAAAACTTGATGCTCTTGTGAGTTTGGTGACACACTTGGCCAGTAATAAGAGACCAGCACCTCCATCTACATCTATTGTACAACTATGTGGCATATGTCCTTCTAGTGATCATTATACAGATGCATGTCCTTCTTTGCAGCAATTGGTTGGCCTAGATTCTCCTCAAGCCTATGCTGCAAACATCTACAACAACAGACAACCACAACAATAA 519 0.4586 MAKRLIPTFNRILVEKIVPPSKTSAGILLPEKSSQLNSGKVIAVGPGSRDKAGNFIPVSVKEGDRVLLPEYGGTQIKLDDKEYVLFWICFLPLVDFEEKKVERKLDALVSLVTHLASNKRPAPPSTSIVQLCGICPSSDHYTDACPSLQQLVGLDSPQAYAANIYNNRQPQQ 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g02620 172 CDD cpn10 4 86 IPR020818 GO:0005524|GO:0006457|GO:0044183
Vimu11g02620 172 FunFam 10 kDa chaperonin, mitochondrial 1 87 - -
Vimu11g02620 172 PANTHER 10 KDA HEAT SHOCK PROTEIN 1 86 IPR020818 GO:0005524|GO:0006457|GO:0044183
Vimu11g02620 172 SUPERFAMILY GroES-like 4 86 IPR011032 -
Vimu11g02620 172 SMART Cpn10_2 4 88 IPR020818 GO:0005524|GO:0006457|GO:0044183
Vimu11g02620 172 Pfam Chaperonin 10 Kd subunit 6 85 IPR020818 GO:0005524|GO:0006457|GO:0044183
Vimu11g02620 172 PRINTS 10kDa chaperonin signature 5 20 IPR020818 GO:0005524|GO:0006457|GO:0044183
Vimu11g02620 172 PRINTS 10kDa chaperonin signature 61 73 IPR020818 GO:0005524|GO:0006457|GO:0044183
Vimu11g02620 172 PRINTS 10kDa chaperonin signature 26 47 IPR020818 GO:0005524|GO:0006457|GO:0044183
Vimu11g02620 172 Gene3D GroES chaperonin 1 87 IPR037124 GO:0006457
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g02620 Vimu-Chr11 46476407 46479120 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g02620 7 86 Calmodulin-binding Proteins AT5G20720 33.333 8.96e-07 45.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g02620 11 46476407 46479120 Vimu11g02620 11 46476407 46479120 ECH