Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g02614 ATGGGGAAAAGACAAATCCCAGACCCTCCTAACTTGAAGAAATACGGCGTTCCATTCTACTCTGTTGCTTGGATTCCTCAACATCTTATCAAATCGTGCCAAATTCAAACCGCCGATGATTCATCCGACTCCGATCATAACTCTGCGCTCTCCACCGAACCAGAGTCAGAGTCCGCGTCTAAGGCGGAGTCGGAGCCTGCGTCGGTCACTGGTAACTACCTGCTGTTCACCGGTGGTGGTGGAGCAGGTCGCAGTGGTATTCCTAATGCTTTGGTGATTGCACACTTCGATATTGCATCTAATTCTCTCTCCAGCCAACCGGTGTTTAAGTTAGGAACTGATTCCGAATTGCCTTATAGGATGGCACTTCAATCCCAGGGTGATGGCCTTATTTGTGCAATGGAAACGCCAAAAGTTTGCAGATGGTTTGACTGGGATTATCAAAACAAGAGCTCTGAAATTCATAAGTTGAGTCTGAAGATGTCAGATAAAGTGCTCACGCAGTTGGAGGATGTTGGACAGCAATTAGCATTAGCATTCAACAATGATGGTACTGCACTAGCTGCTGGTGGGGAGGATGGAAATATAAGGGTTTTCAAGTGGCCTAGCATGGAAGTTATTCTCAACGAATCTAATGCTCATTCTTCTGTGAAGGATTTACATTTCAGTTCTGATGGTAAATTACTTGCCTCTTTGGGAAGTGGTGGCCCCTGCAGGGTTTGGGACATTTCTTCATCAATGGTCTTATCTACTCTACCAAATGAAAATCGTGAAACTTTTAGCTCTTGCAGATTTTCTCAAACAAATGACAAGACTCAAGTCTTGTATATTGCTGCCATGACAGATAAAGGTGGAAGCATCCTTACCTGGAATACACAAACATGGGAAAGGATGGGCTCAAAGCATATTATCCGTGATGCAATCTCTGCATTTAATGTCTCAGCTGATGGAAAGATTCTTGCATGTGGAACACCTTCAGGAGACATTGTAATTGTAAATTCAACAAATATGCGAATTCAGACAATGATAAAAAAGGCTCATCTTGGCATTGTAACTGCTTTAGCATTCTCCCCTGATTCAAGGGCTTTGGCTTCGGTATCCATGGATTCAAGTGCAAGGGTAACAATAATTGAAGAGAAGAAGACAAATGGAGGGCTGAGCTTGTGGATTGCAGTATTTATCATCCTACTTGCTATTGCTGCTTACTTTCTCCAGCAAGGACTTGAAAAATGA 1233 0.4323 MGKRQIPDPPNLKKYGVPFYSVAWIPQHLIKSCQIQTADDSSDSDHNSALSTEPESESASKAESEPASVTGNYLLFTGGGGAGRSGIPNALVIAHFDIASNSLSSQPVFKLGTDSELPYRMALQSQGDGLICAMETPKVCRWFDWDYQNKSSEIHKLSLKMSDKVLTQLEDVGQQLALAFNNDGTALAAGGEDGNIRVFKWPSMEVILNESNAHSSVKDLHFSSDGKLLASLGSGGPCRVWDISSSMVLSTLPNENRETFSSCRFSQTNDKTQVLYIAAMTDKGGSILTWNTQTWERMGSKHIIRDAISAFNVSADGKILACGTPSGDIVIVNSTNMRIQTMIKKAHLGIVTALAFSPDSRALASVSMDSSARVTIIEEKKTNGGLSLWIAVFIILLAIAAYFLQQGLEK 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g02614 410 ProSiteProfiles Trp-Asp (WD) repeats profile. 344 374 IPR001680 GO:0005515
Vimu11g02614 410 SMART WD40_4 294 333 IPR001680 GO:0005515
Vimu11g02614 410 SMART WD40_4 204 242 IPR001680 GO:0005515
Vimu11g02614 410 SMART WD40_4 162 200 IPR001680 GO:0005515
Vimu11g02614 410 SMART WD40_4 335 376 IPR001680 GO:0005515
Vimu11g02614 410 PANTHER PROLACTIN REGULATORY ELEMENT BINDING PROTEIN 11 405 IPR045260 GO:0005085
Vimu11g02614 410 MobiDBLite consensus disorder prediction 36 65 - -
Vimu11g02614 410 Pfam WD domain, G-beta repeat 177 199 IPR001680 GO:0005515
Vimu11g02614 410 Pfam WD domain, G-beta repeat 345 374 IPR001680 GO:0005515
Vimu11g02614 410 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 68 374 IPR011047 -
Vimu11g02614 410 Gene3D - 66 383 IPR015943 GO:0005515
Vimu11g02614 410 ProSiteProfiles Trp-Asp (WD) repeats profile. 210 251 IPR001680 GO:0005515
Vimu11g02614 410 FunFam SEC12-like protein 2 66 381 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g02614 Vimu-Chr11 46386911 46394682 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g02614 11 46386911 46394682 Vimu11g02614 11 46386911 46394682 ECH