Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g02611 ATGGATGATGAAGTTGTTCAGCGAGTGTTCCATGAAGGAGGACGCGATTACTTCCAACAACAGCCTTCGACTTCTTCGTCTTCCTCTTCCATCCTCCAATCTCTCCCTCTCCATGTGTCTTTTGATCATGGATATTATTTGTTGGTAAAATCTATTCAAGAACTCCGAGAGAAAAAGGATGGCCTTGTTACTGTTGGCATTGGTGGTCCAAGTGGATCTGGTAAAACAAGCTTAGCAGAAAAGGTGGCATCTGTTATTGGTTGTACCGTTATATCAATGGGGAATTACCGTCATGGGGTTGATGAAGGGAATGATGTGGATTCTGTAGATTTTGATACGCTGATCAAGAATCTTGAGGATTTGACTAAAGGCAAGGATACATTAATCCCAAAGTTTGACTATCAGCAAAAGAAGCGTGTTGGCTATAAAGCAATAAAGAGCGCTTCATCTGGGGTGGTAATAGTTGACGGCACATATGCATTACATGCAAAACTGCGGTCTTTACTGGACATACGAGTTGCTGTGGTTGGTGGTGTTCATTTTAGCTTGCTTTCTAAAGTACGCTATGACATTGGAGATTCTTGCTCACTGGATTACCTCATAGATAGCATTTTTCCACTGTTTAGGAAACACATTGAGCCAGATCTTCATCATGCACAGATCAGAATTAATAACAGCTTTGTCTCATCATTCAGAGAGGCAATATACAAGGTTAAATGCAGAAGTGAGTCTACAGATGGACATTCAGGTTCCGCTTTTCAAGGAAATGAAGCCCAAACAGACAATTTTATTGAAATGTACCTTAGACCGCCTTCATCTAGTGAAGAAGCAAGGATAAATGATTGGATCAAAGTGCGGCAGTCTGGAATTAGATATTATCTATCACTTGGTGACCAGAGGATTGTCGACAAGAATTTCATTATCAGGCCTAAAGCTGAATTTGAGGTTGGTCGAATGACATTGGGTGGGCTGTTGGCTCTTGGGTATACTGTTGTGGTTAGTTATAAGCGTGCATCGGCAACTGTCAATAATGGCAAGGTTACCATCTCTTTTGAGACCATTGATGTTCTTGGTGAGTCATTTATGGTGATGAGAGGAACTAATAGAAAGACTGTTGGAACAGAAGCATCAAGGATGGGTATTGATGGACCTTGGATTACCAAATCATATCTGGAAATGATTCTGGAGAGAAAAGGTGTACCTCGTCTTAGTACTCCACCACTTGTGTCTAATACTACTGTGGCTGGTAGTCAAGAAACAGCAATCATTGCCCCAAAGCCAATCCGAGTTACTCCTAGTGTTGTTACTGGGTTTGAGGATTTACCCCAGCCATGGACTCGATCCCCAACAAAATCTAAAATGGAACCTGTTGTGGCTGCATGGCATTTCATATCTTCAGATTCCTCCCAGCCTGACAATTCAGTTCTAGACTTCTCTCATGAAGCAACCACAGATCCTTCATCTTTCAGGGATAATATTAGGCTTGCTCCAATGCCTGATTCATTTGACTTGGACAGGGGATTGCTTTTGGCTGTTCAAGCAATACAAGCATTGTTGGAGAATAAAGGTGTCCCAGTCATAGTTGGAATTGCGGTAGTTCTGATAGAATCACTTATCCTGGAGAAGTTCTGCATTTCAGGAGGTCCAAGTGGGTCTGGGAAGACTAGTTTGGCTCATAAAATGGCAAATATAATTGGTTGTGAAGTAGTTTCCCTGGAAAGCTATTATAAACAAGTAAAGGACTTTAAATATGATGACTTCAACACACTTGATTTATCTTTGCTATCGAAGGATTCTCATGGACCATATGATTGTTCTATACTGCATTCTGACCCAGTGACCTCTTACATGGACTTGGACTTTAATAATTCTTTGACGAATGATCAATAA 1890 0.4106 MDDEVVQRVFHEGGRDYFQQQPSTSSSSSSILQSLPLHVSFDHGYYLLVKSIQELREKKDGLVTVGIGGPSGSGKTSLAEKVASVIGCTVISMGNYRHGVDEGNDVDSVDFDTLIKNLEDLTKGKDTLIPKFDYQQKKRVGYKAIKSASSGVVIVDGTYALHAKLRSLLDIRVAVVGGVHFSLLSKVRYDIGDSCSLDYLIDSIFPLFRKHIEPDLHHAQIRINNSFVSSFREAIYKVKCRSESTDGHSGSAFQGNEAQTDNFIEMYLRPPSSSEEARINDWIKVRQSGIRYYLSLGDQRIVDKNFIIRPKAEFEVGRMTLGGLLALGYTVVVSYKRASATVNNGKVTISFETIDVLGESFMVMRGTNRKTVGTEASRMGIDGPWITKSYLEMILERKGVPRLSTPPLVSNTTVAGSQETAIIAPKPIRVTPSVVTGFEDLPQPWTRSPTKSKMEPVVAAWHFISSDSSQPDNSVLDFSHEATTDPSSFRDNIRLAPMPDSFDLDRGLLLAVQAIQALLENKGVPVIVGIAVVLIESLILEKFCISGGPSGSGKTSLAHKMANIIGCEVVSLESYYKQVKDFKYDDFNTLDLSLLSKDSHGPYDCSILHSDPVTSYMDLDFNNSLTNDQ 629
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g02611 629 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 63 176 IPR027417 -
Vimu11g02611 629 CDD UMPK_like 64 226 - -
Vimu11g02611 629 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 548 582 IPR027417 -
Vimu11g02611 629 PANTHER URIDINE KINASE 503 596 - -
Vimu11g02611 629 Gene3D - 63 243 IPR027417 -
Vimu11g02611 629 Pfam Phosphoribulokinase / Uridine kinase family 107 223 IPR006083 GO:0005524|GO:0016301
Vimu11g02611 629 Gene3D - 507 624 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g02611 Vimu-Chr11 46346280 46359952 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g02611 64 223 PRT Gene Family AT1G55810 22.905 1.84e-07 52.0
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g02611 11 46346280 46359952 Vimu11g02611 11 46346280 46359952 ECH
Vimu11g02611 11 46346280 46359952 Vimu7g00906 7 8816270 8824437 PCT