Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g02598 ATGGCATCAAACATGGAAGATGAAGAAGAAAGCAGCAATGGAGACCCTCCCCGCAAGAAACTCCGTCTCACAAAGGAACAATCTCGTCTCCTTGAAGAAAGCTTCAGACAAAACCACACCCTAAACCCAAAGCAGAAAGAGTGTTTGGCAATGCAACTGAAGCTGCGACCAAGGCAAGTGGAGGTCTGGTTTCAGAACCGTAGGGCCAGAAGCAAGCTGAAGCAGACAGAGATGGAGTGTGAGTACCTGAAGAGGTGGTTTGGGTCACTGACAGAGCAGAACAGAAGGCTTCAGAGGGAAGTAGAGGAACTGAGGGCCATGAAAGTGGGGCCACCCACCGTCATTTCCCCACACTCTTGTGACCCACTACCAGCCTCCACATTAACCATGTGTCCCCGCTGTGAGCGCGTCACCACCACCGCCGACAAACTGCCTTCCGCCGCCTCCATTTTGTCCGCTAAAGTCCCACCGCACTCCCCTCAACCTTCTGCCGCCTCTGAAGCTGGAAAAGATTGGAATGAAACAAGTTCGGAGGTAAAGCTGAAGAGGAAAGTCGAAGAAGTTTGA 567 0.5203 MASNMEDEEESSNGDPPRKKLRLTKEQSRLLEESFRQNHTLNPKQKECLAMQLKLRPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGSLTEQNRRLQREVEELRAMKVGPPTVISPHSCDPLPASTLTMCPRCERVTTTADKLPSAASILSAKVPPHSPQPSAASEAGKDWNETSSEVKLKRKVEEV 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g02598 188 SMART halz 74 117 IPR003106 GO:0006355|GO:0043565
Vimu11g02598 188 MobiDBLite consensus disorder prediction 1 37 - -
Vimu11g02598 188 Pfam Homeodomain 18 72 IPR001356 GO:0003677
Vimu11g02598 188 SMART HOX_1 16 78 IPR001356 GO:0003677
Vimu11g02598 188 MobiDBLite consensus disorder prediction 11 33 - -
Vimu11g02598 188 Pfam Homeobox associated leucine zipper 74 108 IPR003106 GO:0006355|GO:0043565
Vimu11g02598 188 SUPERFAMILY Homeodomain-like 9 75 IPR009057 -
Vimu11g02598 188 Coils Coil 87 107 - -
Vimu11g02598 188 ProSiteProfiles 'Homeobox' domain profile. 14 74 IPR001356 GO:0003677
Vimu11g02598 188 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 7 152 - -
Vimu11g02598 188 MobiDBLite consensus disorder prediction 149 188 - -
Vimu11g02598 188 ProSitePatterns 'Homeobox' domain signature. 49 72 IPR017970 GO:0000981|GO:0006355
Vimu11g02598 188 FunFam Homeobox-leucine zipper protein 18 2 79 - -
Vimu11g02598 188 Gene3D - 10 80 - -
Vimu11g02598 188 CDD homeodomain 17 75 IPR001356 GO:0003677
Vimu11g02598 188 MobiDBLite consensus disorder prediction 173 188 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g02598 Vimu-Chr11 46204266 46207594 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g02598 7 148 Homeobox Transcription Factor Family AT1G70920 67.606 1.26e-58 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Vimu11g02598 Homeodomain 4.1e-17 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g02598 11 46204266 46207594 Vimu11g02598 11 46204266 46207594 ECH