Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g02588 ATGGGTTATTGCAAAGAAGGGTCGTCCTATTATAACGTTCTTGGTGTTAGTTCGGATTCTAGCGTGGAAGAGATAAAGCGTGCTTACAGAAAGCTTGCTATGCAATGGCACCCTGATAGGTGGACAAAGATGCCTTCTTTGCTGGGAGAAGCCAAACACAAATTCCAGCAAATTCAAGAAGCCTATTCGGCAGTGTTGTCGGACAGTAAGAAAAGAACTCTGTATGATGCGGGTTTGCATGATCCTCAAGAGGGAGAGGACGAGGGGTTTTCTGATTTTTTGGAAGAAATGTTGTCTCTCATGGCTCAAGCGAGGAGAGAGAAAAAACATTACGATTTGAAAGAGTTGCAGGGGATGTTGATGGAAATTGCTAAAGGATTCGAGTGTCCTTCAATGTACTGTGGGGTGCCCTCTGTGATTGATGAGTCTCGATGCTTAAAAAAGACTCGTTTAGACACGAGCACGGTAGAGAATAAGGGGTCACATTTTCAAGTACCTGATCTTAACCTCTATTGCAGTTAA 522 0.4349 MGYCKEGSSYYNVLGVSSDSSVEEIKRAYRKLAMQWHPDRWTKMPSLLGEAKHKFQQIQEAYSAVLSDSKKRTLYDAGLHDPQEGEDEGFSDFLEEMLSLMAQARREKKHYDLKELQGMLMEIAKGFECPSMYCGVPSVIDESRCLKKTRLDTSTVENKGSHFQVPDLNLYCS 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g02588 173 SMART dnaj_3 8 71 IPR001623 -
Vimu11g02588 173 PANTHER PUTATIVE, EXPRESSED-RELATED 5 129 - -
Vimu11g02588 173 ProSiteProfiles dnaJ domain profile. 9 79 IPR001623 -
Vimu11g02588 173 SUPERFAMILY Chaperone J-domain 8 85 IPR036869 -
Vimu11g02588 173 Gene3D DnaJ domain 7 118 IPR036869 -
Vimu11g02588 173 PRINTS DnaJ domain signature 50 70 IPR001623 -
Vimu11g02588 173 PRINTS DnaJ domain signature 11 29 IPR001623 -
Vimu11g02588 173 PRINTS DnaJ domain signature 29 44 IPR001623 -
Vimu11g02588 173 PRINTS DnaJ domain signature 71 90 IPR001623 -
Vimu11g02588 173 Coils Coil 94 114 - -
Vimu11g02588 173 Pfam DnaJ domain 10 76 IPR001623 -
Vimu11g02588 173 CDD DnaJ 10 68 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g02588 Vimu-Chr11 46028805 46029726 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g02588 10 77 C2H2 Transcription Factor Family AT1G74250 47.826 2.82e-12 62.0
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g02588 11 46028805 46029726 Vimu11g02588 11 46028805 46029726 ECH