Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g02587 ATGGGAATACCTGATAGCTCACTATTAGATCTAGAAAAAGTAAGGTCTTGGGTTTCTTGGGGAGGAAGTGATTTGTGTTATTTGTCTGAGAAATTTGATATGCACCATAGCGGCAGCAAAATGTGTTGTGAGTGCAATAGGAATTTCAGTGAGATGATTCAGCACAGATACAATTGCAAAAGCTGTGGTCGTTGGTTCTGTGGGAAATGCATCGGGGTTTGTGATCTCCCAAATCTTGAATCTGAGAACACAGGATTCAGGGAAACTATTCGTTCTTGCAAGTTTTGTTTGGATGCCAATATGAGGATATGTTTTGAGGGTCAGAGGAAGTGCAGTGAGAAAGTGCACCCTTCTGTCTCTCCTCAAGAGAGTCCAAGACAAAGTCCTGAGCCATCTTCTCCATGCTTTAGTGTCGAGAGTGATAGGATCAGTTCTCCTCTGAATGCTGAATTGAATCAGGGATCTCACTTTGAACGCTGTTTTCATGACCATGATTATGGGTATTATCCTTGTTCTGAAGTCAACAAGAGTTTGACTTCATCTGCTACTCGCCCTTCTTCGCTATCTACTCATCCGTCTACCTTCAGGAGTAACGAAGAGGGGATGGAGGATTGTGGGAAGGACTTTCTCAGCCAATCACGTACATATTGTGATAATTATTCAGATATAGATTCAAGTAGCGTTAGTGCTAGACATGACACTTACAACTATAATTCTGTGGGCTCAAGTCCTTCAGATAGCCCTTCTAGGATTGCTTTTACTTCTAGTTGGGCTGTGATTCCTGTACAGAAGGAGCAGGAGAAAAGCCCCATCCCTCAGAATGATGGTCCCATTAGTCAACAAAGTATGGCTGTTTTAAGAAAGCCTGAACAAGGGACCGAGGATGCATATACTACTGCTTATTTTTCAGATGACTTGTCTATTTTCCGGAACCAGGATGAGAATATGCAGAGACCATTGGATTTTGAAAACAATGGTCATATTTGGTTCCCCCCACCACCTGATGATGAAAATGATGATGCCGAAGGTAATTTCTTTGCATATGATGATGAGGATGATGATATTGGTGACTCAGGGGCCATGTTCTCATCCAGTAGCAGTCTATCTAATATGTTTGCTGGAAAGGAGAAACATAATGATGGAAACAAGGAACCTTTAAGAGCTGTCATCGAAGGGCATTTTAGAGCTCTTGTTTCACAGCTTTTACAAGGAGAGGGAATTAAAGTTGGTAATGAAAATGATTCTGATGACTGGCTTGACATAGTTGCAACGGTAGCATGGCAGGCTGCTAACTTTGTTAGGCCAGATACGAGCAAAGGTGGCAGTATGGATCCTGGTGATTATGTAAAGGTCAAATGTATAGCATCTGGAAGCCCAAGTGAGAGCACCCTTATAAAAGGTGTAGTTTGTACAAAAAATATTAAGCACAAGCGCATGACCTCTCAATACAAAAATCCCAGATTACTCCTTTTAGGAGGAGCTCTAGAATATCAGAAAGTTCCAAATCAATTGGCTTCTTTTGATACATTGCTACAGCAGGAAAATGATCATTTGAAGATGATCATTTCAAAAATTGAGGCTCTTCGACCAAATGTTTTACTGGTAGAAAAAACTGTAGCTTCGTGTGCCCAGGAATATTTGCTCGCAAAGGAAATCTCCTTGGTGTTAAATGTCAAAAAGCCTTTGTTGGAGCGTATAGCTCGGTGCACTGGTGCTCTTATCACTCCATCAGTGGATAGTTTATCTAAAGCACGTCTGGGGCACTGTGAGTTGTTCCGGTTAGACAGAATGGTGGAAGATCATGAGACCGCTAATCAGTTAAACAGGAAGCCATCCAAAACATTAATGTTTTTTGAAGGTTGTCCACGGAGATTGGGTTGCACGGTCTTGCTGAAGGGCACATGTCGGGAAGAACTAAAGAAAATTAAACATGTTGTGCAATATGCTGTTTTTGCAGCCTACCACTTATCTCTTGAGACCTCATTCCTTGCTGATGAGGGTGCTTCCCTACCTAAAATGATAGTAAAACATTCTACTGACACGCCTGAGAGTGCAACAGCTGACACTGATATTTCCATGATGTCTAACACCTTTTCTACAAGCATGCCCCAATCAGAGGTTGACGAGGCTTCCAGAGTGAAAGACATTGTTGGCACTGATTTAAAACTTGAAACTTTGGGATCTGGGCCGGAGCATCTTGATGATCTTAGTTGTCATTCATATACGGACACCATGGCAGATTATAGATCTGAGAGTGTACTCTCTGATTCATATTATAATAATTTAACTTCTAATTTGACTGTAGATTCAGATTATATACATCTGCGCAATGAGTCAGAAGGAGACACTATTTTTACTACAAGAGACTTTTCGCAATCAGGTTTGCTTGAAACCATGGTTCAAGAGGAGAGGGAGTGTGGTGAAGTTGCTGAATCAGCAAAAGACAAGACTAACGAGGATGAGCTTTCTGGTGAATACTTTTCTGCCACTGATGGTCATCAGAGTATATTGGTGTACTTTTCAAGTCATTGTGTTTCAAAAGGAACTGTATGTGAACGTACCAGATTGCTGCGCATAAAATTTTATGGCTCGTTTGATAAGCCTCTTGGAAGATATCTTCGTGATGATCTGTTTGATCAGGAATGCTGCTGTCAGTCTTGTAAAGAGCCAGCAGAGGCTCATGTCCTTTGTTTTACTCACCTGCAAGGAAATCTCACAATCAATGTTAAACGCCTTCCCTCTGTTAAGTTACCAGGGGAAAGAGACGGTAAGATTTGGATGTGGCACCGGTGTCTGAGGTGTCCATTTGAGGATGGAGTTCCGCCAGCAACTCGGAGAGTTGTCATGTCAGATGCAGCTTGGGGATTATCTTTTGGAAAGTTCTTGGAGCTTAGCTTTTCAAACCATGCAACTGCAAACCGAGTTGCAACCTGTGGACATTCCTTGCAGAGGGATTGCCTTCGTTATTATGGGTTTGGGAGCATGGTTGCTTTCTTCCGGTATTCTCCTATTGATATTCTTTCTGTCCATCTACCCCCGTCTGTGTTGGAATTTGGCCATATCCAAGAGGGGTGGATTAGAAAGGAGGCTGAAGAGCTTTCTATTAAAGTGGAAACATTGTATGCGGAGATATCCAATGTGCTTGGACGGCTGGAAGCAAAGATTGTATCTGCTAGTATTGGAAATGAATCATCAGATACATGTGGCATTCAGAACGACATACTTGATCTCAAAGATATGCTTCGAAGAGAAAGAAGTGACTATCATTCTTTGCTGCGGTCAGACATAGTAGCTCCACAACCTGGGAAGATGGCATTAGACATTCTGGAACTAAATCGCCTGAGGCGATCTCTTCTTATTGGTTCATATGTTTGGGATCACCGACTATACTCATTGGACTCTCTCATTAAGAAAAGTTTTAGTTCCAAGGTTAAACAGGAAAATGAACTTTGTGCAGATGTTAAAGAATTAAGAGTTGATTCATTTCACAAGGATCAGAATATTGACTGTGGATCAGAGCAGAATAATACCCGGCTTTCAAAATTGCATGAGTCTCACAAGAGTCATATGCTTGCAGAGCCAGATGACACACTTGAACCTTGTGCTTCGGGATCATCGACATGTTATATTGAGGGAGAGAAAGTACATTCAGATGGAGAACTTAACAAAACATTTTCCGAGTGTATCTCACGTAATGAGTCCAATCTTTCTGAGAAAATAGACTCTGCATGGACTGGAACTGATCAACCTCAAGCCAATGCTGTCCCAGCTGGAAGCATTCAGCAGTCTAATCAACAGGATAGCCCACCTTTTAGAAGGTTGACACAACCAATGAGAGTTCATTCTTTTGATTCAGCAGTAAGAGTTCATGAAAGAATCAGAAAAATCTTGCCGTCATCTTTACATTTATCAACACTTAGATCCTTTCATGCTTCTGGAGATTATGGTAATATGGTCAGAGACCCCGTCTCTAACATATTGCAATCTTATGTTCAAATGTTGCCATGGGAGACACAGAAACTAAATCTGATTCTGAGCTCCACTCCAGCATTCATTTCCTCTGTGTCTACCATAGCTGAAGGGGCTCGATTGCTGCTTTCCCAAACTTATCACGGTGATAGAGTCATTGCTGTCTATGACAATGATTACTCTAGCATAATATCCTATGCGCTTAGTTCCAAGGAATATGAAGATTGGGTGTCTGGTAAGTCAGATCTGCCTGAGGGTAGCTGGATTGCTCGTGAAAGAAGCAAAGAAGATTTAGCTACTTCCAGCTTTTCTGCATGGGGTAGTCTGGACTTGGATTATATAAATTATGGTAGTAGTTATGGGCCAGAAGATGTTCCATCTTCTGTTGTTGGTTCTCTTCTCTGGGACCCCAAAAAGTCTGTACACTTGCAAATTTCCTTTGGTGATGATTCAGTGGGGGCTGGAGGTAAAGTGAATTTTTCTGTCACTTGTTATTTTGCTAAGCAGTTTGAATCACTTAGGAAAAAGTGCTGCCCTAGTGAGGTTGATTTTGTGCGATCTTTGAGCCGATGCCGGAGATGGAGTGCACAAGGGGGGAAAAGTAATGTATATTTTGCCAAGTCATTGGATGAAAGGTTTATAATTAAACAAGTGACGAAGACAGAACTGGAGTCGTTTGTAGAATTTGCACCTCAGTATTTCAAATACCTGATGGATGCCCTGAACTCCGGGGGACCAACTTGCCTAGCCAAAATTCTTGGTATTTATCAGGTAAGTGTGAAATACCCAAAAGGTGGAAAGGAAACAAAAATAGATCTGATGGTAATGGAGAATCTGTTTTACAAGAGAAATATATCGAGGGTATATGATCTGAAGGGCTCAGAAAGATCTAGGTATAATCCAGACACAACTGGGACAAACAAAGTGATGCTGGACATGAATTTGTTAGAAGCATTGAGAACAAAACCAATATTTCTTGGGAGTAGGGCCAAGAGAAGACTGGAAAGAGCTGTATGGAATGACACATCCTTTTTGGCGTCTGTTGATGTTATGGACTATTCTTTGCTGGTTGGGGTGGATGATGAGCGGAAGGAGTTGGTTTTGGGAATCATTGATTTCATGAGACAATACACATGGGACAAACATTTAGAGACATGGGTGAAGGCTTCTGGGATTCTTGGTGGTCCAAGGAATGCAGCCCCCACAATAGTTTCTCCTAAACAATACAAGAAAAGGTTCAGGAAGGCCATGACTACCTACTTTCTCACCTTACCCCTTGAAAATGTATAA 5259 0.4162 MGIPDSSLLDLEKVRSWVSWGGSDLCYLSEKFDMHHSGSKMCCECNRNFSEMIQHRYNCKSCGRWFCGKCIGVCDLPNLESENTGFRETIRSCKFCLDANMRICFEGQRKCSEKVHPSVSPQESPRQSPEPSSPCFSVESDRISSPLNAELNQGSHFERCFHDHDYGYYPCSEVNKSLTSSATRPSSLSTHPSTFRSNEEGMEDCGKDFLSQSRTYCDNYSDIDSSSVSARHDTYNYNSVGSSPSDSPSRIAFTSSWAVIPVQKEQEKSPIPQNDGPISQQSMAVLRKPEQGTEDAYTTAYFSDDLSIFRNQDENMQRPLDFENNGHIWFPPPPDDENDDAEGNFFAYDDEDDDIGDSGAMFSSSSSLSNMFAGKEKHNDGNKEPLRAVIEGHFRALVSQLLQGEGIKVGNENDSDDWLDIVATVAWQAANFVRPDTSKGGSMDPGDYVKVKCIASGSPSESTLIKGVVCTKNIKHKRMTSQYKNPRLLLLGGALEYQKVPNQLASFDTLLQQENDHLKMIISKIEALRPNVLLVEKTVASCAQEYLLAKEISLVLNVKKPLLERIARCTGALITPSVDSLSKARLGHCELFRLDRMVEDHETANQLNRKPSKTLMFFEGCPRRLGCTVLLKGTCREELKKIKHVVQYAVFAAYHLSLETSFLADEGASLPKMIVKHSTDTPESATADTDISMMSNTFSTSMPQSEVDEASRVKDIVGTDLKLETLGSGPEHLDDLSCHSYTDTMADYRSESVLSDSYYNNLTSNLTVDSDYIHLRNESEGDTIFTTRDFSQSGLLETMVQEERECGEVAESAKDKTNEDELSGEYFSATDGHQSILVYFSSHCVSKGTVCERTRLLRIKFYGSFDKPLGRYLRDDLFDQECCCQSCKEPAEAHVLCFTHLQGNLTINVKRLPSVKLPGERDGKIWMWHRCLRCPFEDGVPPATRRVVMSDAAWGLSFGKFLELSFSNHATANRVATCGHSLQRDCLRYYGFGSMVAFFRYSPIDILSVHLPPSVLEFGHIQEGWIRKEAEELSIKVETLYAEISNVLGRLEAKIVSASIGNESSDTCGIQNDILDLKDMLRRERSDYHSLLRSDIVAPQPGKMALDILELNRLRRSLLIGSYVWDHRLYSLDSLIKKSFSSKVKQENELCADVKELRVDSFHKDQNIDCGSEQNNTRLSKLHESHKSHMLAEPDDTLEPCASGSSTCYIEGEKVHSDGELNKTFSECISRNESNLSEKIDSAWTGTDQPQANAVPAGSIQQSNQQDSPPFRRLTQPMRVHSFDSAVRVHERIRKILPSSLHLSTLRSFHASGDYGNMVRDPVSNILQSYVQMLPWETQKLNLILSSTPAFISSVSTIAEGARLLLSQTYHGDRVIAVYDNDYSSIISYALSSKEYEDWVSGKSDLPEGSWIARERSKEDLATSSFSAWGSLDLDYINYGSSYGPEDVPSSVVGSLLWDPKKSVHLQISFGDDSVGAGGKVNFSVTCYFAKQFESLRKKCCPSEVDFVRSLSRCRRWSAQGGKSNVYFAKSLDERFIIKQVTKTELESFVEFAPQYFKYLMDALNSGGPTCLAKILGIYQVSVKYPKGGKETKIDLMVMENLFYKRNISRVYDLKGSERSRYNPDTTGTNKVMLDMNLLEALRTKPIFLGSRAKRRLERAVWNDTSFLASVDVMDYSLLVGVDDERKELVLGIIDFMRQYTWDKHLETWVKASGILGGPRNAAPTIVSPKQYKKRFRKAMTTYFLTLPLENV 1752
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g02587 1752 FunFam 1-phosphatidylinositol 3-phosphate 5-kinase isoform X1 460 633 - -
Vimu11g02587 1752 SUPERFAMILY GroEL apical domain-like 461 633 IPR027409 -
Vimu11g02587 1752 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 28 103 IPR013083 -
Vimu11g02587 1752 SUPERFAMILY FYVE/PHD zinc finger 34 100 IPR011011 -
Vimu11g02587 1752 SUPERFAMILY SAICAR synthase-like 1473 1744 - -
Vimu11g02587 1752 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 36 101 IPR017455 -
Vimu11g02587 1752 CDD PIPKc_PIKfyve 1481 1744 IPR044769 GO:0000285
Vimu11g02587 1752 FunFam 1-phosphatidylinositol 3-phosphate 5-kinase FAB1 1603 1745 - -
Vimu11g02587 1752 Pfam Phosphatidylinositol-4-phosphate 5-Kinase 1520 1686 IPR002498 GO:0016307|GO:0046488
Vimu11g02587 1752 Gene3D Phosphatidylinositol Phosphate Kinase II Beta 1460 1601 IPR027484 -
Vimu11g02587 1752 PANTHER 1-PHOSPHATIDYLINOSITOL 3-PHOSPHATE 5-KINASE-RELATED 29 1748 - -
Vimu11g02587 1752 Gene3D GroEL 460 633 IPR027409 -
Vimu11g02587 1752 CDD Fab1_TCP 395 667 - -
Vimu11g02587 1752 FunFam Putative 1-phosphatidylinositol-3-phosphate 5-kinase FAB1C 1435 1601 - -
Vimu11g02587 1752 CDD FYVE_like_SF 41 96 - -
Vimu11g02587 1752 MobiDBLite consensus disorder prediction 1246 1272 - -
Vimu11g02587 1752 MobiDBLite consensus disorder prediction 180 196 - -
Vimu11g02587 1752 Pfam TCP-1/cpn60 chaperonin family 416 657 IPR002423 GO:0005524
Vimu11g02587 1752 SMART PIPK_2 1456 1745 IPR002498 GO:0016307|GO:0046488
Vimu11g02587 1752 MobiDBLite consensus disorder prediction 180 204 - -
Vimu11g02587 1752 Gene3D - 1602 1745 - -
Vimu11g02587 1752 ProSiteProfiles Phosphatidylinositol phosphate kinase (PIPK) domain profile. 1422 1744 IPR002498 GO:0016307|GO:0046488
Vimu11g02587 1752 MobiDBLite consensus disorder prediction 116 140 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g02587 Vimu-Chr11 45975847 45982589 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g02587 1 1748 Acyl Lipid Metabolism Gene Families AT1G71010 53.255 0.0 1686
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g02587 11 45975847 45982589 Vimu11g02587 11 45975847 45982589 ECH
Vimu7g01554 7 14670572 14679917 Vimu11g02587 11 45975847 45982589 PCT