Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g02209 ATGGAGAATCGGGTCGGGCATGTGGAAGAAGAAGTTATTCGAATAAAAGCGATCATGGAAGAGTTGCGTCTACAAGCATTCCAGAATCATTCAGCATTAGAAGAGATGAGACAAGAAGCGGCAGAAAATCAAACAAAAATGATGGAGTTGATGACGAGGAGTTTTGAAAAAAGAATTCATGAAGAGGGTGAATGTTCGGTGGGAAACAGAAAAACAGAGCCTAAGAAAAACACCAAGGGTGGAGTGAGCTTGACAACCTTAGAAGGAGATGCTCTGGGGGAGTTTCGACAATCCGTAAAAAGGATTGAGTTACCAACATTCAATGGCGATGATCGGCGGGATGGATTTCGAGAGCGGAGATTTACTTCAAGATTCAGGAGACCAGAATTGCTGGAACGTTACGGAGGAATGGGGGAAGGGAGCGTATATGATCAGTTGACAGCGTTGAATCAAACAGGGAGCATGGACGAGTATATTGGACGATTTGAATGCTTGATCGCCCAAATTCCTAAGCTCCATGATGAGCAATATTTTTCATACTTTACCCATGGTCTGAGGGAAGAGGTCCGAGCTAAGGTGCGGAGCTTACATATCGCAAACCCTCTAACAAGAGGACGATTGATGAATGTGGCTCGTGCTATTGACTTGGAAGTGTCGGGACGAGACAGAGGATGGCACAGGCGAAATGAGAGGCATGTAGTAGGAGGTGATAATCTGGGTCACAAAACTGGATCCAACATAATGGGACGAGTGGGCCAAAAAGGGTATGGAGCTAATGGATGGAGTAATGGGTCAGGCCCAAATTGGAAGGGTGGTATAAATGATAGAGGAGCACGTGAGAGGGGTGTGCGTCATTTATCTTATCAGGATTTGGTGGATAGAAGAAAGAAAGGGTTGTGTTTCAAATGTGGTGGGCCGTATGGGCCAAATCATCAATGCCCAATTAAACAATTGAGGGCCATAGTGGCCGAAAATGAGATTCAGGTTGAGTTTGAAGATGAAGAAGAAATCCCTAAAAGTGACGGCGAGGGTGAAACTGAGGAAGTCGATGGAGTTTGCACTGCCATCAGTCTCTTCGTGCTGGAGAAAGAAATTCAAGACGCGCCCAGAACTATGAAATTAAAAGGAATGATCAATGGGGTACCTCTCCTCATTTTGATAGATTCCGGAGCGTCTCATAATTTCGTTTCGCGACGGTTAGTGAAGGCAATGGAATGGGAATGGAAGAATACTCGGAGGATGCGTATATTGATGGGAGATGGTCATCAAACAGAAACAGCAGGGGTTTGTCGGGAATTGAAGATTGTTCTGGAGACAGGGGAGTTCGTAGTGGATGCGTTTTTGTTCGAACTCGAGGATATTGATCTTATCCTTGGCATGGCATGGCTAGAGTCGTTGGGGGAGATGTGGGTAGATTGGAAGAAGCAAATCATGAAGCTTAATTCGGCCCAAGGGATTAAAGTGCTTAGAGGGACGGAGAAAAGCGAATCTTTGAGTTCTAGTCTCTGCAAGTTTGAAATCGAAGGGGAGACTGAGAAAGAAGAAGAAACTAGTCAAACCTTGTTGGAAAAATTAAAACAAACGTTGGGTAAGTCAGAGGAGTGTGTGGGGGTGGTCATTCTGTTTTGTTATCCAATTAATAGTGGAGAGTACCGTTTGGGTCTCTTAAGGAGCGTAGCTCTGGGCAGTAGTACAGGCATATCTCAAAGAGGAATGCTACGGCCTATGTTCCTTAACCCAAATCTAGCAGAGAATTCTTCCTTTCACACTTACGCACTCCCATGTGCCTTGGATCCTGTGCCAGCTGTTTATTCTTCTGTTGACCATCACTTTTACCAATTTGCCCTGTCTCCACATTATCCCGCTCATGTTCCTATGTTACACTGGACACCCTTGCTAAGAATTCCGCTGTTTTGGCGATCCTTCAGATTGAGAACACCAAACTTTGAATCTCCCAAGCCATTTGTGTCCGCACATTGTCTCCTGCCAGCTGCAGCTGCGGTGCTAGAGCAAAGAAATGGTCCCGCTGCTGGAATTGACTCTACAGTTGCAGAATCCTCTCCAACTGTGATAATAAAAGAAAAGGTTGAAGAGAGCTTTGAGCCTATTTGCTTGAATATCCCACATGCTCAAGTTGAAGATGAACCCTCACAGAGAATCAATCCATCATTAAGGCTCTGTGGGTTTCATATCAGAAATGAGATTGAAACAGTGCCAAATGTAGAACACCAATTCATACCAAGTTATGGTGGCAAGTCTCCAGTACGTCACAGCTACCTGAAAGAAGACATGGAACTAAAAGGTCTAGCTGAACTTAGGAGTGGCCCTGGTGAAGAAAATTTTGTTTCCTTGCATTTAGGAGAGCCGGAAATGAAGAGAAGAAAGCACTCAGATCCTTCTTTTTGCATCAAAGAATTAAAACTTTGTATTATAAGCACTCCTGATGGAGAAGTTAACGGAATGTGA 2466 0.4444 MENRVGHVEEEVIRIKAIMEELRLQAFQNHSALEEMRQEAAENQTKMMELMTRSFEKRIHEEGECSVGNRKTEPKKNTKGGVSLTTLEGDALGEFRQSVKRIELPTFNGDDRRDGFRERRFTSRFRRPELLERYGGMGEGSVYDQLTALNQTGSMDEYIGRFECLIAQIPKLHDEQYFSYFTHGLREEVRAKVRSLHIANPLTRGRLMNVARAIDLEVSGRDRGWHRRNERHVVGGDNLGHKTGSNIMGRVGQKGYGANGWSNGSGPNWKGGINDRGARERGVRHLSYQDLVDRRKKGLCFKCGGPYGPNHQCPIKQLRAIVAENEIQVEFEDEEEIPKSDGEGETEEVDGVCTAISLFVLEKEIQDAPRTMKLKGMINGVPLLILIDSGASHNFVSRRLVKAMEWEWKNTRRMRILMGDGHQTETAGVCRELKIVLETGEFVVDAFLFELEDIDLILGMAWLESLGEMWVDWKKQIMKLNSAQGIKVLRGTEKSESLSSSLCKFEIEGETEKEEETSQTLLEKLKQTLGKSEECVGVVILFCYPINSGEYRLGLLRSVALGSSTGISQRGMLRPMFLNPNLAENSSFHTYALPCALDPVPAVYSSVDHHFYQFALSPHYPAHVPMLHWTPLLRIPLFWRSFRLRTPNFESPKPFVSAHCLLPAAAAVLEQRNGPAAGIDSTVAESSPTVIIKEKVEESFEPICLNIPHAQVEDEPSQRINPSLRLCGFHIRNEIETVPNVEHQFIPSYGGKSPVRHSYLKEDMELKGLAELRSGPGEENFVSLHLGEPEMKRRKHSDPSFCIKELKLCIISTPDGEVNGM 821
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g02209 821 Pfam Retroviral aspartyl protease 363 477 - -
Vimu11g02209 821 Gene3D Acid Proteases 359 492 IPR021109 -
Vimu11g02209 821 PANTHER EXPRESSED PROTEIN 665 798 - -
Vimu11g02209 821 Coils Coil 33 53 - -
Vimu11g02209 821 CDD retropepsin_like 374 464 - -
Vimu11g02209 821 SUPERFAMILY Acid proteases 371 467 IPR021109 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g02209 Vimu-Chr11 38555273 38571812 Dispersed/Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g02209 11 38555273 38571812 Vimu11g02209 11 38555273 38571812 ECH