Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g02160 ATGGATTCTCTCACTCCTCTTCTTCCATTTCTTTTCCCTTTTCTGGCAACTTCTTTTGTCACAGTTTTTTCCTTTCAGGTCTCAATCAAACCTACAAATTTGTCTCCTTTAAGTTGCTCAGCTAAGATCCTAACATGTAATGCCTCCCTCTACCACATATCCCATAATCTCACCATTCAGCAAATTGCCTCTTTTTACTCGGTTACTTCTTCCCATATCACACCTATAAAACATGGCACCAAACAAGACTACCTCATCACAGTACCTTGTTCATGCAAACATACGAGTGACCTTAGCGGATATTTCTATGACACCACCTACAAAGTAAGGCCACATGAAACTTTTGTGAATATTTCAAACCTGGTTTTCAGTGGCCAAGCTTGGCCAGTTAATGGTACATTGCATCCAGATGAGAATTTAGCAATAAACCTTCCATGTGGGTGCTCAGAAAGTGACTCTCAAATTGTTGTCACCTATACAGTTCAGCCAGATGATACATCAACAGTGATTGCTAATCTGCTAAATGCTTCACTGGTTGACATGATGAGCATGAACAAGGTTTTGGCTCCGAACTTTAACTTCATAGATGTTGGTTGGGTTCTGTTTGTTCCCAAGGGATCCAAAGGGCTATTACCTGGTACTGCTGCTGTCAATGGTGAGCTCTCTGCCTCTTCCTCTGCAATATTCCATAATGCATGA 699 0.412 MDSLTPLLPFLFPFLATSFVTVFSFQVSIKPTNLSPLSCSAKILTCNASLYHISHNLTIQQIASFYSVTSSHITPIKHGTKQDYLITVPCSCKHTSDLSGYFYDTTYKVRPHETFVNISNLVFSGQAWPVNGTLHPDENLAINLPCGCSESDSQIVVTYTVQPDDTSTVIANLLNASLVDMMSMNKVLAPNFNFIDVGWVLFVPKGSKGLLPGTAAVNGELSASSSAIFHNA 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g02160 232 Gene3D LysM domain 149 209 IPR036779 -
Vimu11g02160 232 PANTHER CHITIN ELICITOR RECEPTOR KINASE 1-RELATED 26 210 IPR044812 GO:0019199|GO:0045087
Vimu11g02160 232 Pfam LysM domain 159 204 IPR018392 -
Vimu11g02160 232 SUPERFAMILY LysM domain 157 204 IPR036779 -
Vimu11g02160 232 ProSiteProfiles LysM domain profile. 157 203 IPR018392 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g02160 Vimu-Chr11 37375559 37376257 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g02160 6 204 LysM Receptor-like Protein (LYPs) Gene Family AT1G77630 28.139 6.03e-10 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g02160 - - gmx:100791718 325.865