Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g01901 ATGGGAAGGGGAAGAGTGGAGTTGAAGAGAATTGAGAACAAGATCAACAGGCAAGTTACCTTCGCTAAACGAAGGAACGGGCTTTTGAAGAAAGCTTACGAGCTTTCCGTTCTTTGTGATGCCGAGGTTGCTCTCATCATCTTCTCCAATAGAGGAAAGCTGTACGAGTTTTGCAGCAGTTCAAGTGTTCGCCTTTCTCTTTCTTTCCCTCTTTTGGTGCTTAACCCAGCATTTGAGTTTGCCGTTTTTCTGCTCCATCAAACAGATCTGGTTCAAAAGCGTTTCCTAAAAGTAATTTTGGACTCTTTGTACGTTCGTTTCATTTCTAGAGAACAACTCTCCGATCCTTTCAGATCTGATTATTGTACCGAAAACTCTGAATGTAGTTTTAGTCAATTGATTTTGGATTGTTTTGCATTGCGTTACACTTCTGACATGTTGCCGCACAAAATAATATATATTTTTCTTAAAACGTGCAGCATGCTCAAAACGCTAGAGAGGTACCAGAAATGTAACTATGGTGCGCCTGAGGCTAATGTGTCTACACGGGAAGCCTTGGTAATGGAGTTAAGCAGTCAACAGGAGTACTTGAAACTGAAGGCACGTTATGAGGCCCTGCAACGGTCCCAGAGGAACCTTATGGGAGAAGATCTTGGTCCTCTTAGCAGCAAAGAGCTTGAATCTCTTGAAAGGCAGCTAGATTCGTCCTTGAAGCAAATAAGATCAACAAGGACGCAGTTCATGCTGGATCAGCTCTCTGAACTTCAGCGTAAGGAACACTTGCTAAGTGAGGCCAACAGGTCTCTCAGACAAAGGTTGGAAGGGTATCAAATAAATCCACTCCAATTGAATCCAGGAGTTGAAGACATGGGATATGGCAGGCATCCAGCTCAAGCTCAGGGTGACGCACTCTTTCAACCGTTGGAGTGTGAGCCAACGTTACAAATTGGGTATCAGCCTGATCCAGTATCAGTGGTGACAGCAGGTCCAAGCATGAGCAATTACATGGCAGGATGGTTACCATAG 1026 0.4415 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSVRLSLSFPLLVLNPAFEFAVFLLHQTDLVQKRFLKVILDSLYVRFISREQLSDPFRSDYCTENSECSFSQLILDCFALRYTSDMLPHKIIYIFLKTCSMLKTLERYQKCNYGAPEANVSTREALVMELSSQQEYLKLKARYEALQRSQRNLMGEDLGPLSSKELESLERQLDSSLKQIRSTRTQFMLDQLSELQRKEHLLSEANRSLRQRLEGYQINPLQLNPGVEDMGYGRHPAQAQGDALFQPLECEPTLQIGYQPDPVSVVTAGPSMSNYMAGWLP 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g01901 341 SUPERFAMILY SRF-like 2 62 IPR036879 GO:0003677|GO:0046983
Vimu11g01901 341 Gene3D - 13 68 IPR036879 GO:0003677|GO:0046983
Vimu11g01901 341 Coils Coil 226 246 - -
Vimu11g01901 341 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Vimu11g01901 341 Pfam K-box region 191 273 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vimu11g01901 341 Coils Coil 252 272 - -
Vimu11g01901 341 ProSiteProfiles K-box domain profile. 189 279 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vimu11g01901 341 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 266 - -
Vimu11g01901 341 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Vimu11g01901 341 CDD MADS_MEF2_like 2 58 IPR033896 GO:0000977|GO:0045944
Vimu11g01901 341 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Vimu11g01901 341 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vimu11g01901 341 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vimu11g01901 341 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vimu11g01901 341 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g01901 Vimu-Chr11 28211783 28219440 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Vimu11g01901 K-box 1.8e-26 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g01901 11 28211783 28219440 Vimu11g01901 11 28211783 28219440 ECH
Vimu11g01901 11 28211783 28219440 Vimu6g01053 6 11211736 11218228 ECH
Vimu11g01901 11 28211783 28219440 Vimu6g01487 6 14159496 14162847 PCT