Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g01681 ATGCAACTTAAGATCTCTATATATACCGTCTCCAGGTTTGGTGGAAGAGTTGAGTCTGCCAGCGGCCTGATTTGTGCCGCCGCCGTTGTTAGTCCTCAAACCACACGCACAAAAATTCCACCCATGTTAGATAACAGTGCTTCTTCTGGTGCACCATCTTCTTCTGATGCCGCCTTTGCATTATCTGAAAATGGGGTGGCGAACAAAAGGAAAAGAAGACCCGCAGGCACACCCGATCCAGATGCTGAGGTTGTGTCTCTCTCACCCACCACCTTGCTGGAATCTGACAGATATGTGTGCGAGATCTGCAACCAAGGGTTCCAGAGGGACCAGAATCTTCAAATGCACAGGAGAAGACACAAGGTACCATGGAAATTGCTCAAGAGGGAAACACAAGGGCAGAAGAAGAGAGTATTTGTCTGTCCAGAGCCAAGCTGTTTGCACCATGACCCTTGTCATGCCCTTGGGGATCTTGTGGGCATCAAGAAGCACTTCAGAAGGAAGCACAGCAATCACAAGCAGTGGGTCTGTGACAAGTGCTCCAAAGGGTATGCTGTTCAATCTGATTACAAGGCACACATCAAAACCTGTGGCACCAGGGGCCATTCCTGTGACTGTGGCCGTGTCTTTTCCAGGGTGGAGAGTTTCATAGAACACCAAGATGCATGTACTGTCCGGCAGCACCGGCCAGATTTGCAAGCACTGCAACCTGCATGCTCTTCTAGAACAGCTTCAAGCGCAAGTCCCTCTAGTGAGGCAAATTTTAGCATAGCCCCACCATTGCAAGGACTTCCATTGCCAAAACCAGCTTCTACTGATCAACCAGCAACAGTCTTATTAACTTCAGAGATACACAATAACAAGTCCACCACCTCTCGAAACTTAGAACTTCAGCTCTTACCCTCCTCAATAAATTCTCAAGAAAAACGAAATCCGAAGGAGAACTATGGTTTGAAACTTTCAATAGGGTCATGTAGTAATGACAAAGGGAATGAAGAGAGAGTGTGCTCAGAAACACATAGGAGCCCACCTGAAAGGAATAATAATGTGAGTGAGTATTCCACATTGGAAGTGGCGAGGTTGAAAGAGTTTGCAGCTGAGGAACTTAAGTTGGCCATGGCAGAAAAAGCTTATGCAGAAGAGGCTAGGAAAGAGGCCAAACGTCAGATTGAGATAGCTGAAATTGAGTTTGAGAATGCCAAAAGGATAAGGAAACAAGCACAATCTGAACTGGCAAAGGCTGAAGAGTTGAGAAAGCACGCCATGAAGAAGATAAGCTCCACTGTTTTGGAAATAACATGCCAAAGTTGCAAGCAACATTTCCAGTCTTCAACTCTTGGGGTTCCATCAGAAGAGACCTCCATTGTAATGAGTTACATGTCTTCAGCCACCACAGAAGGAGAAGCAGAATGA 1413 0.4636 MQLKISIYTVSRFGGRVESASGLICAAAVVSPQTTRTKIPPMLDNSASSGAPSSSDAAFALSENGVANKRKRRPAGTPDPDAEVVSLSPTTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRETQGQKKRVFVCPEPSCLHHDPCHALGDLVGIKKHFRRKHSNHKQWVCDKCSKGYAVQSDYKAHIKTCGTRGHSCDCGRVFSRVESFIEHQDACTVRQHRPDLQALQPACSSRTASSASPSSEANFSIAPPLQGLPLPKPASTDQPATVLLTSEIHNNKSTTSRNLELQLLPSSINSQEKRNPKENYGLKLSIGSCSNDKGNEERVCSETHRSPPERNNNVSEYSTLEVARLKEFAAEELKLAMAEKAYAEEARKEAKRQIEIAEIEFENAKRIRKQAQSELAKAEELRKHAMKKISSTVLEITCQSCKQHFQSSTLGVPSEETSIVMSYMSSATTEGEAE 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g01681 470 Gene3D Classic Zinc Finger 76 141 - -
Vimu11g01681 470 ProSitePatterns Zinc finger C2H2 type domain signature. 100 120 IPR013087 -
Vimu11g01681 470 MobiDBLite consensus disorder prediction 37 56 - -
Vimu11g01681 470 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 51 435 IPR031140 -
Vimu11g01681 470 MobiDBLite consensus disorder prediction 237 273 - -
Vimu11g01681 470 Pfam Zinc finger, C2H2 type 98 120 IPR013087 -
Vimu11g01681 470 ProSiteProfiles Zinc finger C2H2 type domain profile. 98 120 IPR013087 -
Vimu11g01681 470 SMART c2h2final6 139 169 IPR013087 -
Vimu11g01681 470 SMART c2h2final6 98 120 IPR013087 -
Vimu11g01681 470 SMART c2h2final6 175 202 IPR013087 -
Vimu11g01681 470 SUPERFAMILY beta-beta-alpha zinc fingers 97 195 IPR036236 -
Vimu11g01681 470 MobiDBLite consensus disorder prediction 64 86 - -
Vimu11g01681 470 FunFam protein indeterminate-domain 12-like 77 145 - -
Vimu11g01681 470 Gene3D Classic Zinc Finger 160 236 - -
Vimu11g01681 470 Coils Coil 369 424 - -
Vimu11g01681 470 MobiDBLite consensus disorder prediction 237 257 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g01681 Vimu-Chr11 21474530 21477563 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g01681 63 470 C2H2 Transcription Factor Family AT2G01940 55.234 1.03e-153 442
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vimu11g01681 zf-C2H2 0.0045 CL0361
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g01681 11 21474530 21477563 Vimu11g01681 11 21474530 21477563 ECH