Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g01589 ATGGGTGCTCAAAAACGGGTTGTTTGGATGGCGAGAGTTGTAGCGGTGGTTGCAATCGCGGTGGTGGCGAGCGTAGAGGCCCAACCGGAGGCCAAATTCGTGTGCAACAGCGCGAACAACTCAAGGTGTGGCGCCCTCATAGGTTATTCTCACACGAACGGCACCACCCTTGGCGACATCCAAACCCTCTTCACCGTGAAGAAACTTGTGGACATCCTAGGCGCCAACAACTTCCCGAGCAACACCACAAAGAGCCACGTGGTGGGGCCCAACAAGGTTGTGAAGGTGCCGTTGCCGTGCAGGTGCAGCAACGGGACTGGACTCTCGGACGGGGTTCCACTTTATAAGATAAAAAAGGGGGACACGCTGTACGACATAGCGACGACGACGTTTGGGGGTTTGGTGAAGTATCCACAGATCACGGCGGCGAATAAGATACCGGACGAGAATAACATCACCGCCGGGGACACGCTTTATATTCCGCTGCCGTGTAGCTGCGATGCGGTGGATGGGAACAGAGTGGTGCACTATGCGCACCTGGTGTCGTCGGGGAGCACGGTGGAGGGAATTGCTGAGCAATTTGGCACCACTCAGCAGATCCTCCTCACTCTGAATGGCATTTCCGACCCCAAAACACTTCAGGCCGGTCAGATTCTTGATGTTCCTCTTCGAGCTTGTTCCTCGAGTGTGAAAAAAGATTCCTTGGACTATCCATTGCTTGTTGCAAATTCTTCTTACGCCTATACTGCCCACGAATGCGTCAAATGCAGCTATACGTGTGATGTCATTTGTTATGTTGAATATGTATTTAGATTACAATGCGAGCAATCCCACCTCAAACCTACCAACAGGTCCAAATGCCCTTCTGCGCAATGCTCAAGCAACGTCTTCATTGGCAACACCACTTCCTCTACTGATCCCTGCAACCGCACAGTCTGTGCCTATACTGGTTATACATTCCACAATATCTCAGCAGAACTTGTAACGCAGAACACTTGTGCAGTGTCACCGAGTCCTTCAGGAGGATCTAGTGGTTCTGGTTCAGGAGCTCCCAGGAGCACTTTGCAAGGCTTGCTTTGGAGTAATCTTTTCATTCTTATTCACTTTGTTCTCTTTCTTGTCTATGTTTTGTAG 1134 0.5088 MGAQKRVVWMARVVAVVAIAVVASVEAQPEAKFVCNSANNSRCGALIGYSHTNGTTLGDIQTLFTVKKLVDILGANNFPSNTTKSHVVGPNKVVKVPLPCRCSNGTGLSDGVPLYKIKKGDTLYDIATTTFGGLVKYPQITAANKIPDENNITAGDTLYIPLPCSCDAVDGNRVVHYAHLVSSGSTVEGIAEQFGTTQQILLTLNGISDPKTLQAGQILDVPLRACSSSVKKDSLDYPLLVANSSYAYTAHECVKCSYTCDVICYVEYVFRLQCEQSHLKPTNRSKCPSAQCSSNVFIGNTTSSTDPCNRTVCAYTGYTFHNISAELVTQNTCAVSPSPSGGSSGSGSGAPRSTLQGLLWSNLFILIHFVLFLVYVL 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g01589 377 CDD LysM 115 160 IPR018392 -
Vimu11g01589 377 PANTHER LYSM DOMAIN-CONTAINING GPI-ANCHORED PROTEIN 2 10 336 - -
Vimu11g01589 377 ProSiteProfiles LysM domain profile. 177 221 IPR018392 -
Vimu11g01589 377 SMART LysM_2 178 222 IPR018392 -
Vimu11g01589 377 SMART LysM_2 114 161 IPR018392 -
Vimu11g01589 377 Gene3D LysM domain 170 234 IPR036779 -
Vimu11g01589 377 ProSiteProfiles LysM domain profile. 113 160 IPR018392 -
Vimu11g01589 377 Gene3D LysM domain 114 169 IPR036779 -
Vimu11g01589 377 CDD LysM 179 221 IPR018392 -
Vimu11g01589 377 Pfam LysM domain 180 222 IPR018392 -
Vimu11g01589 377 Pfam LysM domain 115 161 IPR018392 -
Vimu11g01589 377 SUPERFAMILY LysM domain 177 222 IPR036779 -
Vimu11g01589 377 SUPERFAMILY LysM domain 114 162 IPR036779 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g01589 Vimu-Chr11 19256383 19261976 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g01589 16 323 LysM Receptor-like Protein (LYPs) Gene Family AT2G17120 48.065 2.34e-88 269
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g01589 - - gmx:100804190 483.026