Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g01574 ATGGCGCCGAGCACCGGAGACCTCCAACTAACTTCCCCCGGCGCCGGCAAAGGTTCCGACGAACTCGAAGATGTTCGCCTCCTCGATTCCTACGAAAAACACTACATCCATCACGATGAAACGAAGCGGATTCAGGTCAGAATCACCGGCATGACCTGCGCCGCGTGTTCCAACTCCGTCGAAACCGCTCTCAGGTCCGTTAACGGCGTAACAGAGGTTTCCGTTGCTCTTCTTCAAAACAAAGCTGACGTCATTTTCAATCCGAGCCTCGTCAAGGATGTCGACATTAAGAATGCGATTGAAGACGCAGGTTTTGAGGCGGAGATCTTGCCGGATTCCGGTCCGGCTGGCGTAGCCGCCGTGGTGGTGGGCCAGTTCACGATCGGCGGGATGACGTGTGCGGCTTGTGTGAATTCCGTTGAGGGCATTTTGAGGAGGCTTAATGGAGTTAAAAGAGTGGTGGTGGCTTTGGCTACTTCATTGGGGGAGGTTGAGTATGATCCCAATGTGATTAGCAAAGATGATATTGTGGCGGCCATTGAAGACGCTGGTTTCCAGGGTTCGTTTGTGAAGAGTAATGGGCAGGATCAGGTTTTGTTGGGGGTTGGTGGTGTGCACTCTCTGGGTGATGCTCGGGTTTTGGAAGGGATGCTCAATGGCACTAAAGGGGTGAGGCAGTTTCGGTTTGACCCGGTGTTGAATGAGCTTGATGTGGCTTATGACCCTGTAGTTATTAGTTCGAGGTCATTGGTTGATGGGATCCAGTTGGGAAGTAATGGTAAGTTTAGATTGCATGTTAGGAATCCATACGCTAGAATGGCTTCCAAAGATGGTTCGGAAACCTCAACTATGTTTCGGCTTTTCATTTCCAGCTTGGTTCTTAGTTCTGTACATGAATTTTATCTTAAGTGGTATTTTGTCTTCATGTTATCTGGGCTTAGACCCCTATGTCCCGTGTATATGGAAAAATGTTTGTTGACAAAGGTTCCTCTATTCTTCATTGGGGTAATCTGTCCTCATATTCCGTTTGTTTACTCCTTGTTACTTTGGAGATGTGGGCCTTTTCTCATGGGTGATTGGTTGAAGTGGGCGTTGGTTAGTGTCATTCAATTTGTGATTGGGAAACGCTTCTATATCGCGGCTGGAAGAGCTCTAAGAAATGGTTCAACAAACATGGATGTTCTGGTTGCTTTGGGAACTACAGCCTCTTATGTTTATTCCGTTTGTGCTCTTCTATACGGTGCCCTTACAGGATTTTGGTCTCCAACATACTTTGAAACAAGTGCTATGCTTATAACATTTGTATTGCTGGGCAAGTATTTGGAGTGCCTTGCCAAGGGAAAGACATCTGATGCTATTAAGAAGCTAGTGGAACTTACTCCAGCAACAGCTTTATTGGTTGTCAAAGATAAAGGTGGTAGAACTATTGAAGAAAGGGAAATAGATTCCTTACTCGTTCAACCTGGTGACACATTAAAAGTTCTTCCTGGTACAAAGATTCCTGCTGATGGTATTGTTACTTGGGGCTCAAGTTATGTAAATGAGAGTATGGTGACCGGTGAATCAACACCCGTTTCGAAGGAGGTGAATGCATCTGTTATTGGAGGTACAATTAATATGCATGGTGTCCTTCACATTCAAGCCACCAAAATAGGATCAGATACAGTTTTGAGTCAGATAATTAGTTTGGTGGAGACAGCTCAGATGTCCAAAGCCCCTATTCAAAAGTTTGCTGATTATGTAAGTATTCTTGTCATGCTCTGTGTAGCAAGCATATTTGTTCCTACGGTTGTGAGTTTGTCATTATTGACACTACTGTGCTGGTATATAGCTGGAGCTCTTGGAGCATACCCAGAAAAATGGCTGCCAGAAAATGGAAATCACTTTGTTTTTGCGCTTATGTTTTCAATATCTGTTGTGGTGATTGCATGTCCATGTGCACTTGGTTTGGCAACACCAACTGCTGTCATGGTGGCAACAGGGGTTGGGGCCAACAATGGCGTGTTAATTAAAGGAGGAGACTCCTTGGAAACGGCTCAGAAGGTGAAATATGTGATATTTGACAAAACAGGCACTCTAACTCAGGGGAAATCCACTGTTACTGCTGCGAGGGTATTCACAGGAATGGACCGCGGAGAATTTCTTACATTAGTGGCTTCTGCTGAGACTGCTCAACTTCCTCACGAGTACTGGCATTCTGAAACTAGATTAAGAAAAATATTGTTAACGCTGTATCATCTTATCCTATTTGCTAGCAGCGAACACCCTCTGGGAAAAGCAATAGTGCAATATGCCCGCCATTTTCTTTTCTTTGATGAGTCTTCGCCTACCAGTGGTACTAAGAATGATGCTGCAGTGTTCAAGTCAGGGTGGCTTTATGATGTTTCAGACTTCTCTGCTCTTCCAGGACGGGGTGTCCAGTGTTTTATAGATGGGAAGCGTATTTTGGTTGGTAACCGGAAGCTTCTGGAAGAAAATGGCATAGAGATTTCTACAGAAGTGGAAAGTTTTGTTGTAGAGCTTGAAGAAAGTGCAAAGACAGGGATACTGGTAGCATATGATGATGTATTAACTGGAGTCTTAGGGATTGCAGACCCACTCAAGAGAGAAGCTTCTGTTGTTATAGAGGGCCTCCGGAAAATGGGAGTCATACCAGTAATGGTTACAGGAGATAACTGGAGAACAGCTCGAGCTGTTGCCAAGGAGGTTGGAATTGAAGATGTTAGGGCAGAGGTTATGCCTGCAGGAAAGGCTGATGTTGTTCGTTCATTCCAAAAGGATGGAAGTATAGTTGCAATGGTTGGTGATGGAATCAATGACTCGCCAGCATTAGCTGCTGCAGATGTAGGTATGGCAATTGGGGCAGGGACAGATGTGGCAATAGAAGCTGCTAACTACGTGCTGATGAGAGATAACTTGGAAGATGTGATCACAGCCATTGATCTTTCCAAAAAGACCTTCTTACGCATTCGATTGAATTATGTATTCGCGATGGCATACAATGTTGTTGCTATACCTGTTGCTGCAGGAGTTTTCTTTCCTTCTTTGAGGATCCAGCTGCCACCATGGCTTGCTGGTGCATGCATGGCTATGTCATCTGTTAGTGTGGTATGCTCTTCTCTGCTTTTGAGAAGATATACAAGGCCCAAACTCACCACAATACTTGAAATTCTTGTAAATTAA 3183 0.4483 MAPSTGDLQLTSPGAGKGSDELEDVRLLDSYEKHYIHHDETKRIQVRITGMTCAACSNSVETALRSVNGVTEVSVALLQNKADVIFNPSLVKDVDIKNAIEDAGFEAEILPDSGPAGVAAVVVGQFTIGGMTCAACVNSVEGILRRLNGVKRVVVALATSLGEVEYDPNVISKDDIVAAIEDAGFQGSFVKSNGQDQVLLGVGGVHSLGDARVLEGMLNGTKGVRQFRFDPVLNELDVAYDPVVISSRSLVDGIQLGSNGKFRLHVRNPYARMASKDGSETSTMFRLFISSLVLSSVHEFYLKWYFVFMLSGLRPLCPVYMEKCLLTKVPLFFIGVICPHIPFVYSLLLWRCGPFLMGDWLKWALVSVIQFVIGKRFYIAAGRALRNGSTNMDVLVALGTTASYVYSVCALLYGALTGFWSPTYFETSAMLITFVLLGKYLECLAKGKTSDAIKKLVELTPATALLVVKDKGGRTIEEREIDSLLVQPGDTLKVLPGTKIPADGIVTWGSSYVNESMVTGESTPVSKEVNASVIGGTINMHGVLHIQATKIGSDTVLSQIISLVETAQMSKAPIQKFADYVSILVMLCVASIFVPTVVSLSLLTLLCWYIAGALGAYPEKWLPENGNHFVFALMFSISVVVIACPCALGLATPTAVMVATGVGANNGVLIKGGDSLETAQKVKYVIFDKTGTLTQGKSTVTAARVFTGMDRGEFLTLVASAETAQLPHEYWHSETRLRKILLTLYHLILFASSEHPLGKAIVQYARHFLFFDESSPTSGTKNDAAVFKSGWLYDVSDFSALPGRGVQCFIDGKRILVGNRKLLEENGIEISTEVESFVVELEESAKTGILVAYDDVLTGVLGIADPLKREASVVIEGLRKMGVIPVMVTGDNWRTARAVAKEVGIEDVRAEVMPAGKADVVRSFQKDGSIVAMVGDGINDSPALAAADVGMAIGAGTDVAIEAANYVLMRDNLEDVITAIDLSKKTFLRIRLNYVFAMAYNVVAIPVAAGVFFPSLRIQLPPWLAGACMAMSSVSVVCSSLLLRRYTRPKLTTILEILVN 1060
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g01574 1060 NCBIfam copper ion binding protein 44 107 IPR006122 GO:0005507
Vimu11g01574 1060 NCBIfam copper ion binding protein 125 186 IPR006122 GO:0005507
Vimu11g01574 1060 Gene3D - 446 568 - -
Vimu11g01574 1060 SUPERFAMILY HMA, heavy metal-associated domain 36 112 IPR036163 GO:0046872
Vimu11g01574 1060 FunFam Probable copper-transporting ATPase HMA5 836 991 - -
Vimu11g01574 1060 SUPERFAMILY HMA, heavy metal-associated domain 125 193 IPR036163 GO:0046872
Vimu11g01574 1060 SUPERFAMILY Calcium ATPase, transmembrane domain M 412 1020 IPR023298 -
Vimu11g01574 1060 NCBIfam HAD-IC family P-type ATPase 793 1019 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vimu11g01574 1060 NCBIfam HAD-IC family P-type ATPase 431 601 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vimu11g01574 1060 PRINTS P-type cation-transporting ATPase superfamily signature 957 969 - -
Vimu11g01574 1060 PRINTS P-type cation-transporting ATPase superfamily signature 686 700 - -
Vimu11g01574 1060 PRINTS P-type cation-transporting ATPase superfamily signature 859 870 - -
Vimu11g01574 1060 PRINTS P-type cation-transporting ATPase superfamily signature 514 528 - -
Vimu11g01574 1060 PRINTS P-type cation-transporting ATPase superfamily signature 934 953 - -
Vimu11g01574 1060 PRINTS P-type cation-transporting ATPase superfamily signature 881 891 - -
Vimu11g01574 1060 ProSiteProfiles Heavy-metal-associated domain profile. 122 188 IPR006121 GO:0046872
Vimu11g01574 1060 PANTHER P-TYPE CATION-TRANSPORTING ATPASE 27 1055 - -
Vimu11g01574 1060 Gene3D - 653 725 IPR023214 -
Vimu11g01574 1060 CDD HMA 125 186 IPR006121 GO:0046872
Vimu11g01574 1060 Pfam E1-E2 ATPase 459 665 - -
Vimu11g01574 1060 ProSitePatterns Heavy-metal-associated domain. 48 78 IPR017969 GO:0046872
Vimu11g01574 1060 Gene3D - 741 841 IPR023299 GO:0000166
Vimu11g01574 1060 SUPERFAMILY HAD-like 685 1040 IPR036412 -
Vimu11g01574 1060 ProSitePatterns Heavy-metal-associated domain. 128 157 IPR017969 GO:0046872
Vimu11g01574 1060 Gene3D - 849 1002 IPR023214 -
Vimu11g01574 1060 FunFam Copper-exporting P-type ATPase 814 865 - -
Vimu11g01574 1060 ProSiteProfiles Heavy-metal-associated domain profile. 42 108 IPR006121 GO:0046872
Vimu11g01574 1060 SFLD p-type atpase 668 985 IPR044492 -
Vimu11g01574 1060 PRINTS Copper-transporting ATPase 1 signature 69 92 - -
Vimu11g01574 1060 PRINTS Copper-transporting ATPase 1 signature 146 167 - -
Vimu11g01574 1060 PRINTS Copper-transporting ATPase 1 signature 43 68 - -
Vimu11g01574 1060 SFLD Haloacid Dehalogenase 668 985 - -
Vimu11g01574 1060 CDD HMA 45 108 IPR006121 GO:0046872
Vimu11g01574 1060 FunFam Copper-exporting P-type ATPase A 40 110 - -
Vimu11g01574 1060 FunFam Copper-transporting ATPase 1, putative 446 568 - -
Vimu11g01574 1060 ProSitePatterns E1-E2 ATPases phosphorylation site. 688 694 IPR018303 -
Vimu11g01574 1060 MobiDBLite consensus disorder prediction 1 21 - -
Vimu11g01574 1060 FunFam Copper-exporting P-type ATPase A 122 190 - -
Vimu11g01574 1060 Gene3D - 124 189 - -
Vimu11g01574 1060 Pfam Heavy-metal-associated domain 126 185 IPR006121 GO:0046872
Vimu11g01574 1060 Pfam Heavy-metal-associated domain 46 106 IPR006121 GO:0046872
Vimu11g01574 1060 CDD P-type_ATPase_Cu-like 329 1031 - -
Vimu11g01574 1060 Pfam haloacid dehalogenase-like hydrolase 682 948 - -
Vimu11g01574 1060 Gene3D - 41 112 - -
Vimu11g01574 1060 SUPERFAMILY Calcium ATPase, transduction domain A 478 564 IPR008250 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g01574 Vimu-Chr11 19038318 19043348 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g01574 11 19038318 19043348 Vimu11g01574 11 19038318 19043348 ECH