Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g00798 ATGAGTGCAAGTTCTTATGGTTTCCCTATTCCATCATCGCTTATGCCAAGCGATGCATCTCCCGAGTGGAACAACAAAGCAGATAATGCATGGCAGCTAACGGCAGCAACCTTAGTGGGCCTTCAGAGCGTTCCTGGGCTTGTGATCTTGTACGGCAGCATGGTTAAGAGAAAATGGGCTGTGAACTCAGCCTTCATGGCCCTATACGCCTTTGCTTGTGTGCTCATTTGTTGGGTTTCATGGGCCCATGGCATGGCATTTGGGACGGAGCTTATGCCATTCGTGGGAAAGCCCAACCACGCTCTGAGTGGGAAGTTTCTGCTTGCGAAGTCAAGTGCTGGGTACTTTCCAATGGCTGACTTCGTGTTCTATCAATTTGCTTTTGCCGCAATCACTGTAGTGTTGCTTGCAGGGTCTTTGCTGGGGAGAATGAACTTCTATGCGTGGATGTTGTTTGTTCCTTTGTGGCTTACGTTCTCTTACACTGTTGGTGCATTCAGCATATGGGACAAATATGGCTTCCTTGAGGGAAAAATAATAGATTATGCTGGTGGCTTCGTCATTCATTTGTCTTCTGGCATTGCAGGTTTCACAGCTGCTTATTGGGTTGGTCCAAGAATTTCATACGACAGGCAAAACTTTCCACCAAACAACATAATTCACGTGCTGGGAGGTGCAGGGTTTTTGTGGATGGGTTGGACAGGTTTTAACGGTGGAGCTACTTTCCGAGTGGGAGAAATTGCATCGTTGGCGATCTTAAACACCCATCTATGTACTGCAACAAGCCTACTGGTTTGGCTTACATTGGACATGATTGTATATACCAAGAGCTCAGTCATAGGAGCCGTACAGGGAATGATCACTGGCCTCGTTTGCATCACACCAGGTGCAGAAGGCTTGGTGGATTCATGGGCAGCAGTATTGATGGGAGTTTTGTCTGGTTCCATTCCATGGTACACTATGATGGTGTTACACAAAAAATCAGCATTCTTTCAGAGTGTGGACGATACATTAGGAGTCTTTCACACTCATGCCGTAGCTGGTCTTCTTGGGGGTCTTCTTTCTGGCGTGTTTGCAAAACCCAAGCTTCTAAGAATAATGTATGGGGATGATCAGTATGGCCCAGGCTTAATCTATAGTTTTTCTAAGGGGGAATCAATGGGTGAAGGGTTTAGGCAAATATGGTACCAGTTAGTTGGAGCAGGTTTTATTATTGTTTGGAATGTGGTTGTTACTAGCCTGGTTTGTGTTCTTATAAGCCACATTGTGGATCTTAGGATGCAAGAAGAAGAGCTTGAGGTTGGTGATGATGCTGCTCATGGGGAAGAAGCATACGCATTGTGGGGTGATGGAGAGAGAATGAGAGTTCCTCTTCGTCTCCATATAAGTCCAACCATTCCTTCTCTGTGCCGGCGAAGGTTTTCTATTCCTCTCACCAGAAACCAAGAAGAGTAG 1455 0.4612 MSASSYGFPIPSSLMPSDASPEWNNKADNAWQLTAATLVGLQSVPGLVILYGSMVKRKWAVNSAFMALYAFACVLICWVSWAHGMAFGTELMPFVGKPNHALSGKFLLAKSSAGYFPMADFVFYQFAFAAITVVLLAGSLLGRMNFYAWMLFVPLWLTFSYTVGAFSIWDKYGFLEGKIIDYAGGFVIHLSSGIAGFTAAYWVGPRISYDRQNFPPNNIIHVLGGAGFLWMGWTGFNGGATFRVGEIASLAILNTHLCTATSLLVWLTLDMIVYTKSSVIGAVQGMITGLVCITPGAEGLVDSWAAVLMGVLSGSIPWYTMMVLHKKSAFFQSVDDTLGVFHTHAVAGLLGGLLSGVFAKPKLLRIMYGDDQYGPGLIYSFSKGESMGEGFRQIWYQLVGAGFIIVWNVVVTSLVCVLISHIVDLRMQEEELEVGDDAAHGEEAYALWGDGERMRVPLRLHISPTIPSLCRRRFSIPLTRNQEE 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g00798 484 ProSitePatterns Ammonium transporters signature. 181 206 IPR018047 GO:0008519|GO:0016020|GO:0072488
Vimu11g00798 484 PRINTS Rhesus blood group protein signature 251 273 IPR002229 GO:0005886
Vimu11g00798 484 PRINTS Rhesus blood group protein signature 125 141 IPR002229 GO:0005886
Vimu11g00798 484 PRINTS Rhesus blood group protein signature 345 361 IPR002229 GO:0005886
Vimu11g00798 484 PRINTS Rhesus blood group protein signature 220 238 IPR002229 GO:0005886
Vimu11g00798 484 NCBIfam ammonium transporter 28 445 IPR001905 GO:0008519|GO:0016020|GO:0072488
Vimu11g00798 484 PANTHER AMMONIUM TRANSPORTER MEP2 12 454 IPR001905 GO:0008519|GO:0016020|GO:0072488
Vimu11g00798 484 SUPERFAMILY Ammonium transporter 23 426 - -
Vimu11g00798 484 FunFam Ammonium transporter 12 448 - -
Vimu11g00798 484 Pfam Ammonium Transporter Family 30 445 IPR024041 GO:0008519|GO:0016020|GO:0072488
Vimu11g00798 484 Gene3D Ammonium transporter AmtB like domains 13 448 IPR029020 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g00798 Vimu-Chr11 8275913 8277643 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g00795 11 8258478 8259921 Vimu11g00798 11 8275913 8277643 PCT