Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g00425 ATGTCTTCAATGGCCATAATATCCACCTTGCTCTTCCTTTGCTTCACTTTCTCACATGTTAACGCCATGTCCCTCATCAATTACTCCGAAAACGAGGTCATGGACATGTACGAGGAGTGGTTGGTGAAGCACGGAAAGGTGTACAATGGGTTGGGAGAGAAGGAGAAGAGGTTTCAAGTGTTCAAGGACAACTTGGGATTCATTCAAGAGCATAACGCTCAGAACAACACATACACTCTTGGCTTGAACAAGTTTGCTGATATCACCAACGACGAATACCGTGCCATGTATTTGGGCACAAGAACTGATGCCAAACGCAGGGTCATGAAAACCCAGAGGACCGGTCACCGCTATGCTTACAACTCCGGTGACCGCTTGCCGGTGCACGTCGATTGGAGGTTGAAAGGTGCACTTGCTCCCATCAAAGATCAGGGTAGTTGTGGAAGTTGTTGGGCTTTCTCAACAGTGGCTACTGTGGAAGCTATAAATAACATAGTGACAGGGAAGTTTGTGTCGCTATCAGAACAAGAGCTTGTGGACTGTGACAGAGAGTATAATGAAGGATGCAATGGTGGCCTCATGGACTACGCATTCCAGTTCATCATTAAAAATGGTGGCATAGACACAGAAGAAGATTATCCATACAAGGGCCGTGATGGAACTTGTGATCTAACTAAGAAAAAGGCCAAGGTAGTGCAAATTGATGATTACGAGGATGTTCCATCATATGACGAAAATGCCTTAAAGAAAGCTGTTGCTCATCAACCCGTAAGCGTTGCTATTGAAGCCTCTGGCATGGCTTTGCAACTTTATCAGTCTGGTGTGTTTACGGGTAAATGTGGAACAAATTTAGATCATGGTGTAGTGGTGGTTGGATATGGGAGTGAAAATGGAGTTGATTACTGGCTGGTGAGGAATTCATGGGGCAGTGGATGGGGTGAGGATGGCTATTTCAAGATGGAGCGCAACGTGAGAAGCAGCAAAACAGGAAAGTGTGGAATTGCAATGGAGGCTTCCTACCCTGTTAAGTATGGTCTAAACTCTGCAGTTCCTAATTCAGCTTACCAAAGCAATGAGGTGTCTATCAGCAGTGCTTGA 1098 0.4545 MSSMAIISTLLFLCFTFSHVNAMSLINYSENEVMDMYEEWLVKHGKVYNGLGEKEKRFQVFKDNLGFIQEHNAQNNTYTLGLNKFADITNDEYRAMYLGTRTDAKRRVMKTQRTGHRYAYNSGDRLPVHVDWRLKGALAPIKDQGSCGSCWAFSTVATVEAINNIVTGKFVSLSEQELVDCDREYNEGCNGGLMDYAFQFIIKNGGIDTEEDYPYKGRDGTCDLTKKKAKVVQIDDYEDVPSYDENALKKAVAHQPVSVAIEASGMALQLYQSGVFTGKCGTNLDHGVVVVGYGSENGVDYWLVRNSWGSGWGEDGYFKMERNVRSSKTGKCGIAMEASYPVKYGLNSAVPNSAYQSNEVSISSA 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g00425 365 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 284 294 IPR025660 -
Vimu11g00425 365 PRINTS Papain cysteine protease (C1) family signature 144 159 IPR000668 GO:0006508|GO:0008234
Vimu11g00425 365 PRINTS Papain cysteine protease (C1) family signature 301 307 IPR000668 GO:0006508|GO:0008234
Vimu11g00425 365 PRINTS Papain cysteine protease (C1) family signature 286 296 IPR000668 GO:0006508|GO:0008234
Vimu11g00425 365 SMART pept_c1 126 342 IPR000668 GO:0006508|GO:0008234
Vimu11g00425 365 CDD Peptidase_C1A 127 341 IPR039417 -
Vimu11g00425 365 SMART Inhibitor_I29_2 37 93 IPR013201 -
Vimu11g00425 365 Pfam Cathepsin propeptide inhibitor domain (I29) 37 93 IPR013201 -
Vimu11g00425 365 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 30 341 IPR013128 GO:0008234
Vimu11g00425 365 FunFam Cysteine protease 1 18 344 - -
Vimu11g00425 365 Gene3D Cysteine proteinases 18 344 - -
Vimu11g00425 365 Pfam Papain family cysteine protease 126 342 IPR000668 GO:0006508|GO:0008234
Vimu11g00425 365 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 144 155 IPR000169 -
Vimu11g00425 365 SUPERFAMILY Cysteine proteinases 29 342 IPR038765 -
Vimu11g00425 365 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 301 320 IPR025661 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g00425 Vimu-Chr11 4528471 4530762 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g02960 1 41992007 41994038 Vimu11g00425 11 4528471 4530762 ECH
Vimu11g00425 11 4528471 4530762 Vimu11g00425 11 4528471 4530762 ECH