Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g03659 ATGAAGATCCAGTGTGATGTCTGTGACAAAATGGAAGCCAAAATCTTCTGTCCTGCAGATGAAGCTGCTCTTTGCCATGCCTGCGATCGCACCATTCACCATGCCAACAAGCTTGCAACCAAACACCCTCGTTTCCCTCTCATCTTCCCCACCTCCAAAGACTTCCCTCTCTGTGATATCTGCCAAGAGAAGCGTGCGTATCTATTCTGCCAAGAAGACAGAGCATTGTTGTGCAGGGAATGTGACCTTCCAATCCACATAGCGAATGAGCATACTCAGAAGCATAACAGGTTTCTTTTAACGGGGGTGAAGCTTTCCCCCACTTCTTTGGATTATGCTTCCTCCTCCACCAATTGCACCGATACACTCTCTGAAGGAAAAAACGCTCGATCTAGAATGAACACACCCAGATCAATTTCCAACGAAAATCACAGCTCTTCTTGCAAGGTTGAAGACAACGTGGGCAGTGACACTGGCTCGGTTTCAACCAGCAGCATTTCTGAGTATTTGATCGAGACGATACCCGGTTACTGTTTCGAAGAACTCCTTGATGGTTCATTCGCACCTAATAATGGTTTCTGTAAGAAGCAGAATCATGATCATCTTTGGGAGTTTCAGGAGCAAGATCTAGCTCTGGAGTTAAGGAAATTCCAAATGGGGGATGTTATGGTTGTGCCGTTTCTTAAACTAGTTGTTCGATTGATAAAAAATCTAGACCAACTACTTGTAAAAATCTGTTGGGAAATATCTTGTATGATTTCGTTATCTGAATTTCTTTTTGGGTTCTGTGCTTGCATTCTTTTTATAAACTAA 813 0.4317 MKIQCDVCDKMEAKIFCPADEAALCHACDRTIHHANKLATKHPRFPLIFPTSKDFPLCDICQEKRAYLFCQEDRALLCRECDLPIHIANEHTQKHNRFLLTGVKLSPTSLDYASSSTNCTDTLSEGKNARSRMNTPRSISNENHSSSCKVEDNVGSDTGSVSTSSISEYLIETIPGYCFEELLDGSFAPNNGFCKKQNHDHLWEFQEQDLALELRKFQMGDVMVVPFLKLVVRLIKNLDQLLVKICWEISCMISLSEFLFGFCACILFIN 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g03659 270 MobiDBLite consensus disorder prediction 111 159 - -
Vimu10g03659 270 Gene3D Classic Zinc Finger 1 100 - -
Vimu10g03659 270 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Vimu10g03659 270 CDD Bbox1_BBX-like 5 47 - -
Vimu10g03659 270 FunFam B-box zinc finger protein 21 1 98 - -
Vimu10g03659 270 CDD Bbox1_BBX-like 57 100 - -
Vimu10g03659 270 ProSiteProfiles Zinc finger B-box type profile. 53 100 IPR000315 GO:0008270
Vimu10g03659 270 Pfam B-box zinc finger 56 92 IPR000315 GO:0008270
Vimu10g03659 270 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 205 - -
Vimu10g03659 270 SMART bboxneu5 4 47 IPR000315 GO:0008270
Vimu10g03659 270 SMART bboxneu5 53 100 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g03659 Vimu-Chr10 45736521 45737560 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBB Vimu10g03659 zf-B_box 5.2e-08 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g03659 10 45736521 45737560 Vimu10g03659 10 45736521 45737560 ECH
Vimu10g03659 10 45736521 45737560 Vimu7g03030 7 25543693 25545553 ECH