Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g03658 ATGCAAAGAAGAACAGAAGGAGAAGAAGAAGTAGTGTCAAGGGGTTCTAAGTGCCAAGACTGTGGGAATCAAGCCAAGAAGGAATGTTCATATTCAAGATGCAGAACTTGTTGCAAGAACAAAGGCTTTCAGTGCCAAACCCATATCAAAATTTCAGGTTTAGAGATGAAATTTCCTTGTGCTACGAGTTCGATGGCTGTGTTTCGGTGCGTTCAGGTTCGGTCTGTGGATGATGGGGTTAACGAAATAGCGTATCAAACATCTGTGAACATCGGTGGGCATGTATTCAGTGGAATACTATATGATCAAGGCCCTGAACAAAGCTATAACATTAACAAGGGTGAGAGTTCCACTGCTCTTGTTGATGAACACCAGAATAGTAATCTTGGTCTGCTGAAGAATGCTTCAATCCACAGTAGAGATAGCAGTGGTGTAACTATAGCCTCTGCCGGTCACGCTGACCCTCTTTTTCCTCCACCACCGTATCCCTTTCCGCTTGCTTCCTTCAGACCCGGAATGCCATATTTCACATACCCAAGATCTTGA 546 0.4414 MQRRTEGEEEVVSRGSKCQDCGNQAKKECSYSRCRTCCKNKGFQCQTHIKISGLEMKFPCATSSMAVFRCVQVRSVDDGVNEIAYQTSVNIGGHVFSGILYDQGPEQSYNINKGESSTALVDEHQNSNLGLLKNASIHSRDSSGVTIASAGHADPLFPPPPYPFPLASFRPGMPYFTYPRS 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g03658 181 NCBIfam LRP1 C-terminal domain 57 105 IPR006511 -
Vimu10g03658 181 Pfam Domain of unknown function (DUF702) 15 51 - -
Vimu10g03658 181 Pfam Domain of unknown function (DUF702) 56 106 - -
Vimu10g03658 181 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 54 139 IPR007818 GO:0003700|GO:0006355
Vimu10g03658 181 NCBIfam putative zinc finger domain, LRP1 type 17 50 IPR006510 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g03658 Vimu-Chr10 45716785 45717944 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Vimu10g03658 DUF702 2.2e-19 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g03658 10 45716785 45717944 Vimu10g03658 10 45716785 45717944 ECH
Vimu10g03447 10 44276968 44278494 Vimu10g03658 10 45716785 45717944 ECH
Vimu10g03658 10 45716785 45717944 Vimu7g03005 7 25329978 25331628 ECH