Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g03462 ATGGCTACACATCACCTTTTTCTTCTACCTACCATCTTCTTCCACCTTCTTCTCCTGTTCTCCCTTACCCTTCCCTTCCCCTCCCAAGCTTCCAATGCCAAATGGCAGATACTCCAAAAATCCATAGGCATCGTCGCTATGCACATGCAGCTCCTCAACAATGACCGTATCATCATCTTCGACCGCACCGACTTCGGCTCTTCCAACCTCACTCTCCCCAACGGCAACTGTCGCCACGATAACTCAGAAATTGTTGTCAAAACAGACTGCACCGCTCACTCCATCGAATATGACGTCGCATCCAACACCTTCCGTGCCCTCTTCGTCCAAACAGACGTCTGGTGCTCCTCCGGCGGCGCCGTCGCCGACGGCACCCTCATCCAAACCGGCGGCTACAACGACGGCGACCGCAAAATAAGGTCCTTCGCTCCATGCGAAACAGGTCAGGACTGTGAGTGGCAAGAAACCGACCACGCCCTCGCAGTAAGAAGATGGTACTCCACCAATCACTATTTGCCAGATGGACGACAAATTATAATCGGAGGGAGAAGACAATTCAACTACGAGTTTCATCCTAAGCGAAAAACAGAAGAGAATAACAAACCCTACGTGTTACCGTTTCTGCTTCAGACTGATGATAAGGGTGCGGAAAATAATCTTTATCCGTTTGTTGTTTTAAACGTGGACGGAAATCTTTTTATTTTCGCCAACAACCGTGCGATTCTGTTTGATTACCAGAACGACGCCGTTGTGAGAACGTACCCCGAGATACCCGGGGGAGACCCTAGGTGTTATCCTAGTACCGGTTCAGCGGTGTTGCTACCACTGAAGAATTTGGAAGCGGCGACGGTGGAAGCTGAGGTTTTGGTCTGCGGTGGGGCCCGCAGAGGGGCTTTTCAGCTTGTGCACAAGGGTGTTTTCTCCAAAGCGATGGATTCTTGCGCGCGGATTAAGATCACGGATCCGAATGCCACGTGGGTGGTGGAGACCATGCCGATGGGGCGGGTGATGGGTGACATGGTCATGCTCCCCAACGGCGACGTTTTGATCATAAACGGAGCTCAATCTGGAACAGCGGGGTGGGGGAATGCAGAGAATCCGGCTCTTCAACCGATTATTTATAGAACAAACAGTTCGGGTGGGTCGCGGTTTGTTTTGCAACCCGCTTCGGATATTCCTAGAATGTATCATTCGACGGCTGTTCTGGTTCGTGATGGAAGAGTGATCGTAGGTGGGAGCAACCCTCACGAGAAATACGTGTTCTCTAATGTGTCGTACCCTACGGAGTTGAGTTTGGAAGCTTTTTCTCCTTACTATCTGGACTCTGAGTTTGAGGCTGTACGTCCCATTATTGAAGAGCCTTGTTCTTACGTGAAGTTGATGTATGGCGAGAAATTGAAGATGAGTATTAAGGTGAATGGAAGGCTGGTGCCTGAGTTATTGTCGGTGACGATGTTGGCGCCGCCTTTTAACACGCACTCTTTTTCCATGAGTCAGAGGTTGTTGGTGTTGTCGATGGGTGAAGTTAAGGTGAGGGGAAATTCAAGTTGTGAATTTGAGGTGACGGCGCCAGGTTCAGCTGTTCTTGCACCACCCACGTTTTATATGCTATTTGCGGTTCATGGAGACATTCCCAGCGAGGGAATTTGGATCAAGATGCAATGA 1665 0.5003 MATHHLFLLPTIFFHLLLLFSLTLPFPSQASNAKWQILQKSIGIVAMHMQLLNNDRIIIFDRTDFGSSNLTLPNGNCRHDNSEIVVKTDCTAHSIEYDVASNTFRALFVQTDVWCSSGGAVADGTLIQTGGYNDGDRKIRSFAPCETGQDCEWQETDHALAVRRWYSTNHYLPDGRQIIIGGRRQFNYEFHPKRKTEENNKPYVLPFLLQTDDKGAENNLYPFVVLNVDGNLFIFANNRAILFDYQNDAVVRTYPEIPGGDPRCYPSTGSAVLLPLKNLEAATVEAEVLVCGGARRGAFQLVHKGVFSKAMDSCARIKITDPNATWVVETMPMGRVMGDMVMLPNGDVLIINGAQSGTAGWGNAENPALQPIIYRTNSSGGSRFVLQPASDIPRMYHSTAVLVRDGRVIVGGSNPHEKYVFSNVSYPTELSLEAFSPYYLDSEFEAVRPIIEEPCSYVKLMYGEKLKMSIKVNGRLVPELLSVTMLAPPFNTHSFSMSQRLLVLSMGEVKVRGNSSCEFEVTAPGSAVLAPPTFYMLFAVHGDIPSEGIWIKMQ 554
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g03462 554 Gene3D - 29 444 IPR037293 -
Vimu10g03462 554 Pfam Galactose oxidase-like, Early set domain 448 552 IPR015202 -
Vimu10g03462 554 SUPERFAMILY E set domains 445 553 IPR014756 -
Vimu10g03462 554 CDD E_set_GO_C 444 553 IPR015202 -
Vimu10g03462 554 PANTHER SECRETED PROTEIN-RELATED 17 553 - -
Vimu10g03462 554 Pfam Glyoxal oxidase N-terminus 47 293 IPR009880 -
Vimu10g03462 554 Gene3D Immunoglobulins 447 554 IPR013783 -
Vimu10g03462 554 SUPERFAMILY Galactose oxidase, central domain 94 441 IPR011043 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g03462 Vimu-Chr10 44405098 44406762 Tandem
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g03462 10 44405098 44406762 Vimu10g03462 10 44405098 44406762 ECH
Vimu10g03462 10 44405098 44406762 Vimu1g03184 1 44015977 44017422 PCT