Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g03459 ATGTCGGAAACGATTAGAGAAAATGACGACGGATCAACGTTGAAAACGTCGAGAAGCTCCAGGTTCTGGCCTCGTTGGATTCCCACTTCCGTCGATGATATCATCGCTGCCGAGAAGCGCCTTCTCTCCGTCGTCAAAACCGGTTGTGTTCAAGAGCACGTTAACATAGGTTCTGGTCCTCCTGGCTCTAAAGTGAGATGGTTCCGTTCAGCTAGTAACGAGCCGCGGTTTATTCACAGCGTCACATTTGACAGTAAACCTGATGCTCCTACGCTTGTGATGATTCATGGTTATGCTGCTTCCCAGGGGTTCTTTTTTCGCAATTTTGATGTGCTTGCCTCTCGATTTAGAGTCATTGCTGTTGATCAACTTGGCTGGGGTGCATCAAGCAGACCTGATTTTACTTGCAAAAGCACTGAAGAAACTGAGGCATGGTTCATTGATTCTTTTGAGGAATGGAGAAAAGCCAAAAATTTGAGCAATTTTATACTACTTGGACATTCTTTTGGTGGTTATGTTGCTGCTAAATATGCGCTCAAGCACCCTGAGCATGTACAACACTTGATTCTGGTTGGATCTGCTGGATTTTCATCAGAATCAGATGCAAAATCTGAGCGGATTACAAGGTTTCGAGCAACATGGAAGGGAGCAGTTTTGAACCATCTATGGGAATCTAATTTTACACCTCAAAAACTTGTCAGAGGTTTAGGTCCTTGGGGTCCCAACATAGTCCGCAAGTATACAAGTGCTAGGTTTGGTACACATTCTACTGGGGAAATACTAACAGAGGAGGAATCAACATTGCTGACAGATTATGTTTACCACACACTGGCGGCCAAAGCTAGTGGGGAGCTGTGCTTAAAATATATTTTTTCATTTGGAGCATTTGCTAGGATGCCCCTTCTTCTCAGTGCCTCCGAGTGGAAGGTGTCCACCACTTTCATATATGGTTTCGAAGACTGGATGAATTATCAGGGTGCCCAAGAAGCTCGTAAGCATATGAAGGTTCCATGCGAAATCATCAGGGTTCCTCGGGCCGGGCACTTTGTGTTCATTGACAACCCAACTGCCTTCCATTCAGCTGTTTTTTATGCTTGTCGAAGATTTTTTATTCCTGATCCAGACAACGAATCTCTTCCTAATGGGTTAACCTTTGCATAG 1161 0.4453 MSETIRENDDGSTLKTSRSSRFWPRWIPTSVDDIIAAEKRLLSVVKTGCVQEHVNIGSGPPGSKVRWFRSASNEPRFIHSVTFDSKPDAPTLVMIHGYAASQGFFFRNFDVLASRFRVIAVDQLGWGASSRPDFTCKSTEETEAWFIDSFEEWRKAKNLSNFILLGHSFGGYVAAKYALKHPEHVQHLILVGSAGFSSESDAKSERITRFRATWKGAVLNHLWESNFTPQKLVRGLGPWGPNIVRKYTSARFGTHSTGEILTEEESTLLTDYVYHTLAAKASGELCLKYIFSFGAFARMPLLLSASEWKVSTTFIYGFEDWMNYQGAQEARKHMKVPCEIIRVPRAGHFVFIDNPTAFHSAVFYACRRFFIPDPDNESLPNGLTFA 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g03459 386 PRINTS Alpha/beta hydrolase fold signature 178 191 IPR000073 -
Vimu10g03459 386 PRINTS Alpha/beta hydrolase fold signature 115 130 IPR000073 -
Vimu10g03459 386 PRINTS Alpha/beta hydrolase fold signature 164 177 IPR000073 -
Vimu10g03459 386 SUPERFAMILY alpha/beta-Hydrolases 78 362 IPR029058 -
Vimu10g03459 386 Pfam alpha/beta hydrolase fold 90 204 IPR000073 -
Vimu10g03459 386 PANTHER RE40534P-RELATED 23 363 - -
Vimu10g03459 386 FunFam Probable 1-acylglycerol-3-phosphate O-acyltransferase 76 366 - -
Vimu10g03459 386 Gene3D alpha/beta hydrolase 69 363 IPR029058 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g03459 Vimu-Chr10 44371563 44376660 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g03459 10 44371563 44376660 Vimu10g03459 10 44371563 44376660 ECH
Vimu1g03182 1 43979060 43982554 Vimu10g03459 10 44371563 44376660 PCT