Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g03451 ATGAAGATCCAGTGCGATGTCTGTAACGAACACCAGGCTTCTTTATTCTGCACCGCCGATGAAGCCGCCCTCTGCGATGACTGCGACCACCGTGTCCACCACGCCAACAAGCTCGCCTCCAAACACCACCGCTTCTCTCTCATCCACCCCTCTGATAAGCATTTTCCTCTCTGTGATATTTGCCAGGAGAAAAGAGCTTTTGTGTTTTGTCAGCAAGATAGAGCAATTCTGTGCAAAGAGTGTGACGTTTCCATTCATTCTGTCAACGAACTCACCAAGAACCATAGCAGGTTTCTTCTCACTGGGATCAAGTTCTCTACTTCCGCCATACCTTATTCTTCTTCTTCTTCTTCTTCATCGTCATCATCATCAGCAGCCAAGAAAAACCCTGTTCTCGATACTTCACACCCACCTTCTAATCCTCCTTCAACACCCTCACGGCCTAAGCCTGGAGGAAACTTGCAAACAAATCAAGAACCTGGTTTCACTGGTAGCAGCATATCAGAGTATTTGATAAACACTATCCCAGGCATGAAGTTCGAAGATTTTCTCGATTCCCATTCAACCTTTGATTGCTCTAAGAATGGTGATGAGATGATGTCGGCTTTTGGTGAGGGAAACATGGTTTCGTTCTCCTCTGGTGGGATCTGGGTTCCTCAAGCGCCACCTTCTGCTGCTGCTGCGTATTGGGAACAGATGGGTGAGCAGAATGGGTACAGAGAGGGAAGGAAAGGTAGCGTTAGATCAAGTTTGGGGGATGATAATAATTTCGTAGTTCCTCAGATGAGTCCTCCCAGCAACGTTTCAAAGAAATCCAGGTTTCTTTGGTAG 831 0.4681 MKIQCDVCNEHQASLFCTADEAALCDDCDHRVHHANKLASKHHRFSLIHPSDKHFPLCDICQEKRAFVFCQQDRAILCKECDVSIHSVNELTKNHSRFLLTGIKFSTSAIPYSSSSSSSSSSSSAAKKNPVLDTSHPPSNPPSTPSRPKPGGNLQTNQEPGFTGSSISEYLINTIPGMKFEDFLDSHSTFDCSKNGDEMMSAFGEGNMVSFSSGGIWVPQAPPSAAAAYWEQMGEQNGYREGRKGSVRSSLGDDNNFVVPQMSPPSNVSKKSRFLW 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g03451 276 CDD Bbox1_BBX-like 5 47 - -
Vimu10g03451 276 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Vimu10g03451 276 MobiDBLite consensus disorder prediction 239 276 - -
Vimu10g03451 276 MobiDBLite consensus disorder prediction 249 270 - -
Vimu10g03451 276 FunFam B-box zinc finger protein 21 1 98 - -
Vimu10g03451 276 MobiDBLite consensus disorder prediction 113 134 - -
Vimu10g03451 276 MobiDBLite consensus disorder prediction 149 165 - -
Vimu10g03451 276 Gene3D Classic Zinc Finger 1 95 - -
Vimu10g03451 276 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 266 - -
Vimu10g03451 276 SMART bboxneu5 4 47 IPR000315 GO:0008270
Vimu10g03451 276 SMART bboxneu5 53 100 IPR000315 GO:0008270
Vimu10g03451 276 CDD Bbox1_BBX-like 57 100 - -
Vimu10g03451 276 ProSiteProfiles Zinc finger B-box type profile. 53 100 IPR000315 GO:0008270
Vimu10g03451 276 MobiDBLite consensus disorder prediction 113 165 - -
Vimu10g03451 276 Pfam B-box zinc finger 56 96 IPR000315 GO:0008270
Vimu10g03451 276 Pfam B-box zinc finger 4 44 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g03451 Vimu-Chr10 44323442 44324516 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBB Vimu10g03451 zf-B_box 3.8e-07 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g03451 10 44323442 44324516 Vimu5g02425 5 34905887 34907953 ECH
Vimu10g03451 10 44323442 44324516 Vimu10g03451 10 44323442 44324516 ECH
Vimu1g03179 1 43965745 43967004 Vimu10g03451 10 44323442 44324516 PCT