Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g03444 ATGGCTACTCCGTCACTCTCCTTCCTCTTCAGTCTCCTCCTTTTCTCCGCCACCTTAGCCATCGCCGAACGAATCGACGGTGAAGAAGACCTTCTGATCCGTCAAGTGGTGCCGGACGCGGAGGAGCACCTGCTCAACGCCGAGCACCACTTCTCCGCCTTCAAGGCGAAGTTCGGCAGGAAGTACGCCACGCAGGAGGAGCACGACCACCGCTTCCGCATCTTCAAGAATAACTTGCTCCGAGCGAAGTCGCACCAGAAGCTTGACCCCTCCGCCGTCCACGGCGTCACGAAGTTCTCCGATCTCACTCCGGCGGAGTTTCGCCGCCAGTTTCTTGGTTTGAAGCCGCTTCTTCTTCCCTCCGACGCTCAGAAGGCTCCGATCCTTCCGACCAACGACCTCCCTAGCGATTTCGATTGGCGCGACCATGGAGCCGTTACTGGCGTCAAGAATCAAGGTTCTTGCGGGTCGTGTTGGTCGTTTAGCGCTGTGGGAGCGCTGGAAGGTGCTCATTTTCTTTCGACCGGTGAGCTCGTGAGCCTTAGCGAACAACAACTCGTGGATTGTGATCACGAGTGTGACCCGCAAGAGCGTGGAGCATGTGACTCTGGTTGTAACGGTGGGTTGATGACCACTGCATTCGAGTACTCACTCAAGGCTGGAGGACTAATGCGAGAAAAGGACTATCCTTACACCGGAAGAGACCGCGGCCCCTGCAAATTTGATAAGAGCAAAATCGCAGCATCTGTAGCTAATTTTAGCGTTGTTTCCCTTGACGAAGAACAAATTGCTGCTAATCTGGTGAAGAATGGTCCTCTTGCAGTTGGTATCAATGCAGTCTTTATGCAGACATATATTGGTGGCGTCTCATGCCCATACATCTGCGGGAAGCACCTGGATCATGGAGTTCTTCTGGTAGGCTATGGTGCTGGTGCTTATGCTCCAATTCGGTTTAAGGAAAAGCCTTTCTGGATCATAAAGAATTCATGGGGGGAGAGCTGGGGAGAAAACGGATATTACAAGATCTGCCGAGGTCACAATGTATGTGGGGTGGACTCGATGGTTTCAACTGTAGCTGCTATACATACTTCTAACAATTAA 1101 0.525 MATPSLSFLFSLLLFSATLAIAERIDGEEDLLIRQVVPDAEEHLLNAEHHFSAFKAKFGRKYATQEEHDHRFRIFKNNLLRAKSHQKLDPSAVHGVTKFSDLTPAEFRRQFLGLKPLLLPSDAQKAPILPTNDLPSDFDWRDHGAVTGVKNQGSCGSCWSFSAVGALEGAHFLSTGELVSLSEQQLVDCDHECDPQERGACDSGCNGGLMTTAFEYSLKAGGLMREKDYPYTGRDRGPCKFDKSKIAASVANFSVVSLDEEQIAANLVKNGPLAVGINAVFMQTYIGGVSCPYICGKHLDHGVLLVGYGAGAYAPIRFKEKPFWIIKNSWGESWGENGYYKICRGHNVCGVDSMVSTVAAIHTSNN 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g03444 366 PRINTS Papain cysteine protease (C1) family signature 301 311 IPR000668 GO:0006508|GO:0008234
Vimu10g03444 366 PRINTS Papain cysteine protease (C1) family signature 152 167 IPR000668 GO:0006508|GO:0008234
Vimu10g03444 366 PRINTS Papain cysteine protease (C1) family signature 323 329 IPR000668 GO:0006508|GO:0008234
Vimu10g03444 366 Gene3D Cysteine proteinases 27 359 - -
Vimu10g03444 366 FunFam Cysteine protease RD19A 31 359 - -
Vimu10g03444 366 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 47 352 IPR013128 GO:0008234
Vimu10g03444 366 SMART Inhibitor_I29_2 51 107 IPR013201 -
Vimu10g03444 366 Pfam Cathepsin propeptide inhibitor domain (I29) 51 107 IPR013201 -
Vimu10g03444 366 SMART pept_c1 134 359 IPR000668 GO:0006508|GO:0008234
Vimu10g03444 366 CDD Peptidase_C1A 135 358 IPR039417 -
Vimu10g03444 366 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 323 342 IPR025661 -
Vimu10g03444 366 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 152 163 IPR000169 -
Vimu10g03444 366 Pfam Papain family cysteine protease 134 357 IPR000668 GO:0006508|GO:0008234
Vimu10g03444 366 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 299 309 IPR025660 -
Vimu10g03444 366 SUPERFAMILY Cysteine proteinases 48 358 IPR038765 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g03444 Vimu-Chr10 44258500 44260028 Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g03444 10 44258500 44260028 Vimu10g03444 10 44258500 44260028 ECH
Vimu1g03177 1 43930720 43933054 Vimu10g03444 10 44258500 44260028 PCT