Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g03436 ATGGAAACCATTACCAATTTAGTTTCCAAGTTACTGACTTTGTTTTTCACGCTCTTGTTTGTCGGTTCTCAGCTTATACATTGTAATGTCACCTATGATAAAAAGTCTCTTCTCATCAATGGCCAAAGGAGAATCCTCATTTCTGGCTCCATTCACTATCCCAGAAGCACCCCTGAGATGTGGGAGGATCTAATTAGGAAGGCCAAACATGGAGGCCTTGATGTCATAGACACTTATGTCTTCTGGGATGTCCATGAACCATCTCCTGGCAATTATAATTTTGAAGGGAGGTATGATCTAGTACGGTTTATTAAGACGGTGCAGAAGGTGGGGCTTTATGCCAACCTTCGAATTGGACCTTACGTGTGCGCTGAGTGGAACTTTGGAGGAATTCCTGTATGGTTGAAGTATGTTCCTGGTGTGAGCTTCAGAACGGATAATGAGCCTTTCAAGGCAGCAATGCAAGGTTTCACACAGAAAATTGTCCAGATGATGAAGACTGAGAAGTTGTTTCAGTCTCAGGGTGGTCCAATAATTCTCTCTCAGATTGAGAATGAGTACGGACCAGAGAGCAGGGCAATGGGAGCTGCTGGTCGTGCGTACTTAAACTGGGCTGCAAGCATGGCTGTTGGATTGGGTACAGGAGTGCCCTGGGTGATGTGCAAGCAAAATGATGCCCCAGATCCCGTGATAAATTCATGTAATGGTTTTTACTGTGATGATTTCACTCCAAATAAACCATACAAGCCTACCATGTGGACTGAGTCTTGGAGTGGCTGGTTTACAGATTTTGGTGGCCCTATTCACCAGCGACCAGTTCAGGATCTATCATTTGCAGTTGCTCGATTCATTCAAAAGGGTGGTTCATATGTGAATTATTACATGTATCATGGAGGAACTAACTTTGGACGATCAGCTGGAGGCCCATTCATTACTACAAGCTATGACTATGACGCTCCAATTGATGAATATGGTTTGATCAGGCAACCAAAATACAGTCATTTGAAGGAGCTTCATAGAGCTATCAAGCGGTGTGAACATGCTTTGGTTTCTTCGGATCCCACAGTTGCGTCGTTAGGAAATCAACAGCAGGCAAGTACTGGAACATGTGCAGCTTTTCTAGCAAACTATAATGCAAACTCTGCTGCTACGGTGACATTCAATAACAGGAACTATGATTTGCCTCCTTGGTCCATAAGCATTCTTCCTGATTGCAAAACTGATGTATTTAATACTGCAAAAGTGAGAGTTCAAACTTCAGAGGTAAAAATGCTTCCTGTCAGTACTAAGTTGTTCTCATGGGAGAGCTATGATGAAGATCTATCTTCTCTGGCTGAGAGTTCAAGGATTACATCTCCTGGACTTTTAGAACAACTCAACGTTACCAGGGACACCAGTGACTACCTATGGTACATAACCAGTATTGACATAAGTTCATCAGAAACCTTTCTTCGAGATGGAAAGAAACCCAGCATTAATGTGCAGTCTGCTGGAGACGCTGTTCATGTTTTCGTTAATGGGCAATTTTCAGGGTCGGCTTTTGGGACAAGGGAGCAGAGAAGTTGCACATTCAATGGACCTATAGATCTCCACGCTGGAACAAATAAAATTGCTCTTCTCAGCGTGACTGTTGGATTACCTAACGTCGGTCGGCATTATGAAACATGGGAGACAGGGATCACTGGTCCAGTCTTGCTACACGGTCTTGACAAGGGACAGAAAGATTTAACATGGAATAAGTGGTCATACAAGGTTGGCCTAAGAGGAGAGGATATGGATTTGGCGTCTCCCAATGGGGTGTCGTCTGTTGATTGGGTCCAAGAATCACAAGGTACACAAAGTCGGCCGCAATTGAAATGGTACAAGGCTTATTTTGATGCACCTGGTGGAAAGGAACCACTGGCTTTGGACCTAGAAAGCATGGGTAAGGGTCAAGTATGGATCAACAGACAAAGCATAGGGAGATATTGGTTGGCCTATGCAAAGGGTGATTGTAATTCTTGCACCTATTCTGGAGGCTTTCGCCCTGTAAAATGCCAACTTGGTTGTGGCCAACCTACTCAGCGATGGTATCACGTTCCAAGGTCCTGGCTAAAGCCAACGAAGAACTTGATCGTAGTGTTGGAAGAATTAGGCGGAAATCCTTGGAAAATCTCTTTGGTTAAGAGAATGGTACATACTCCGGCAGGTCATGGGCAGTGA 2202 0.4419 METITNLVSKLLTLFFTLLFVGSQLIHCNVTYDKKSLLINGQRRILISGSIHYPRSTPEMWEDLIRKAKHGGLDVIDTYVFWDVHEPSPGNYNFEGRYDLVRFIKTVQKVGLYANLRIGPYVCAEWNFGGIPVWLKYVPGVSFRTDNEPFKAAMQGFTQKIVQMMKTEKLFQSQGGPIILSQIENEYGPESRAMGAAGRAYLNWAASMAVGLGTGVPWVMCKQNDAPDPVINSCNGFYCDDFTPNKPYKPTMWTESWSGWFTDFGGPIHQRPVQDLSFAVARFIQKGGSYVNYYMYHGGTNFGRSAGGPFITTSYDYDAPIDEYGLIRQPKYSHLKELHRAIKRCEHALVSSDPTVASLGNQQQASTGTCAAFLANYNANSAATVTFNNRNYDLPPWSISILPDCKTDVFNTAKVRVQTSEVKMLPVSTKLFSWESYDEDLSSLAESSRITSPGLLEQLNVTRDTSDYLWYITSIDISSSETFLRDGKKPSINVQSAGDAVHVFVNGQFSGSAFGTREQRSCTFNGPIDLHAGTNKIALLSVTVGLPNVGRHYETWETGITGPVLLHGLDKGQKDLTWNKWSYKVGLRGEDMDLASPNGVSSVDWVQESQGTQSRPQLKWYKAYFDAPGGKEPLALDLESMGKGQVWINRQSIGRYWLAYAKGDCNSCTYSGGFRPVKCQLGCGQPTQRWYHVPRSWLKPTKNLIVVLEELGGNPWKISLVKRMVHTPAGHGQ 733
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g03436 733 Gene3D Glycosidases 23 345 - -
Vimu10g03436 733 Gene3D - 435 583 - -
Vimu10g03436 733 SUPERFAMILY Galactose-binding domain-like 578 727 IPR008979 -
Vimu10g03436 733 ProSitePatterns Glycosyl hydrolases family 35 putative active site. 175 187 IPR019801 GO:0004553|GO:0005975
Vimu10g03436 733 PRINTS Glycosyl hydrolase family 35 signature 40 57 IPR001944 GO:0004553|GO:0005975
Vimu10g03436 733 PRINTS Glycosyl hydrolase family 35 signature 289 304 IPR001944 GO:0004553|GO:0005975
Vimu10g03436 733 PRINTS Glycosyl hydrolase family 35 signature 61 79 IPR001944 GO:0004553|GO:0005975
Vimu10g03436 733 PRINTS Glycosyl hydrolase family 35 signature 643 659 IPR001944 GO:0004553|GO:0005975
Vimu10g03436 733 PRINTS Glycosyl hydrolase family 35 signature 252 267 IPR001944 GO:0004553|GO:0005975
Vimu10g03436 733 PRINTS Glycosyl hydrolase family 35 signature 616 630 IPR001944 GO:0004553|GO:0005975
Vimu10g03436 733 PRINTS Glycosyl hydrolase family 35 signature 116 135 IPR001944 GO:0004553|GO:0005975
Vimu10g03436 733 PRINTS Glycosyl hydrolase family 35 signature 309 325 IPR001944 GO:0004553|GO:0005975
Vimu10g03436 733 PRINTS Glycosyl hydrolase family 35 signature 173 188 IPR001944 GO:0004553|GO:0005975
Vimu10g03436 733 FunFam Beta-galactosidase 588 729 - -
Vimu10g03436 733 FunFam Beta-galactosidase 443 580 - -
Vimu10g03436 733 SUPERFAMILY (Trans)glycosidases 29 345 IPR017853 -
Vimu10g03436 733 Pfam Beta-sandwich domain in beta galactosidase 349 415 IPR041392 -
Vimu10g03436 733 Pfam Glycosyl hydrolases family 35 36 341 IPR031330 -
Vimu10g03436 733 FunFam Beta-galactosidase 294 417 - -
Vimu10g03436 733 SUPERFAMILY Galactose-binding domain-like 399 570 IPR008979 -
Vimu10g03436 733 FunFam Beta-galactosidase 25 345 - -
Vimu10g03436 733 Gene3D - 593 728 - -
Vimu10g03436 733 PANTHER BETA-GALACTOSIDASE RELATED 22 726 IPR001944 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g03436 Vimu-Chr10 44177138 44181862 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g03436 10 44177138 44181862 Vimu7g03011 7 25371494 25376534 ECH
Vimu10g03436 10 44177138 44181862 Vimu10g03436 10 44177138 44181862 ECH
Vimu1g03160 1 43821507 43827017 Vimu10g03436 10 44177138 44181862 PCT