Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g03354 ATGGATCTGCATGAGGCAGCCATTGAAGAATGCATCAGGGGTGAGGATAAGTTTAAGCAGCTACATTTTGGACTGCATGACTCTTTTGACTATTTAATGCAATTGTACGTCATGAGCTCGTACTCAAAACCACTTTTAAATTGGAACAACGGTACACCAATCTCTACAATCCCTATGTGCACCACTCCGCAGGCTGTAATGCCAACCTTTCCACCCTTTCCAGAGCCAGACCTCTCCTTAAACATCAGCCCTCCATTCACTTCAGATCCTGACGCTAAACAACTGCAAACAAGCTGCAGCAGATTCACATTAACCACCAAAACGCTTTACACTGATCTGTGCTCAACCTCGGATTCTGGTAGCAGTGGAAGCGATTTAAGCCACGAAAATGGTTTTCGCCACACTGTCTACAACCTTGGTCATCGTGAACCGACATTGAGCTTAGGCTCCGGAAGGGAAAATTTGAATCCTCATCCTATACAAGGAGCTGGGTCGAGAAACTTCAATCACCTCCACAACTACCAACCTCAGACCAACACCGTTGATTTCAAACGAAATACTAGAGGCATTCAAGGCGTGAAAAGAAGCTCGAGAGCTCCTAGAATGCGATGGACCACTACCCTCCACGCTCACTTTGTTCATGTGGTTCAGCTTCTTGGTGGACATGAAAGGGCAACTCCGAAGTCTGTCTTAGAGTTAATGAACGTGAAGGATCTAACTCTAGCTCACGTGAAGAGTCACTTGCAGGTGGGGTTACTGTTTCTATCTCTCTGCATTCTCCCTGGTTCCTTTTTCGTGATGTATAGAACAGTGAAGAGCTCTGACAAAAGCAGCGCAGGTTATGGGCAGACAGGTATAGGGTTGAGCCAAAAGCCAGGGATTGTCGATCTGCATGGAGCCTTAGCTTGTGAGAGACCAAATTTGCCACAGCCGCTGCTAAAATCCCACAGGACGCCATGGCAATCATCGATGGAGACAAATTCAATAAATTACATAGAGAGCCCCATTATAAATTCAATGTATTCTGATATGAGAGAAAAGCAAACCATGGTGGGTGGACAGCATTATGGAGGCCTGTCGAATTGCATGGAGGAGAAATTGGAATCTTGCACTTTGTCACGTTCCGATATGACGCTAGACCTAGAATTTACCCTTGGAAGGCCCACTAGTTGCAAAGAGATCACGCAGAAACAACAGAATTAA 1203 0.4564 MDLHEAAIEECIRGEDKFKQLHFGLHDSFDYLMQLYVMSSYSKPLLNWNNGTPISTIPMCTTPQAVMPTFPPFPEPDLSLNISPPFTSDPDAKQLQTSCSRFTLTTKTLYTDLCSTSDSGSSGSDLSHENGFRHTVYNLGHREPTLSLGSGRENLNPHPIQGAGSRNFNHLHNYQPQTNTVDFKRNTRGIQGVKRSSRAPRMRWTTTLHAHFVHVVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQVGLLFLSLCILPGSFFVMYRTVKSSDKSSAGYGQTGIGLSQKPGIVDLHGALACERPNLPQPLLKSHRTPWQSSMETNSINYIESPIINSMYSDMREKQTMVGGQHYGGLSNCMEEKLESCTLSRSDMTLDLEFTLGRPTSCKEITQKQQN 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g03354 400 PANTHER TRANSCRIPTION FACTOR KAN2-RELATED 76 390 IPR044847 GO:0000976|GO:0006355|GO:0010158
Vimu10g03354 400 NCBIfam myb-like DNA-binding domain, SHAQKYF class 200 250 IPR006447 GO:0003677
Vimu10g03354 400 SUPERFAMILY Homeodomain-like 197 250 IPR009057 -
Vimu10g03354 400 Gene3D - 199 252 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g03354 Vimu-Chr10 43614726 43619438 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Vimu10g03354 None None None
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g03354 10 43614726 43619438 Vimu10g03354 10 43614726 43619438 ECH
Vimu1g03049 1 42911397 42914896 Vimu10g03354 10 43614726 43619438 PCT