Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g03341 ATGAAGCCAGCAACCTTCTCATGTATGATCGAGGAGCAACATAAGTCCGTGTTTTTGTCAGGGCTGTGTACACACGGTGGTTCTAAATGTCACCCGGGATTAAGCAATACCAGTTCATGTAAAGATCACACAGAACACTCTCAAGATAATGACTCTGAAAATGTTTCCGACTTGAGATTGCATTTTTCCGCCAAGAGTGCCCCCAACAGCATATTCTCCAGCCCTGTTACTAGTCCACGTAGATCCAGCAATGTAGATTTCTATGATCCTTCCATCATTTTTCATCAAGATTTTAATGACATTTTGAGAGTGTCACCGGTTAAAACTGCTCAGAGTCCAGACCGGACTCCTCTGCGCAGCCCAGGGAGCCTCCTCAATCCAGAGGGATGTCAGAGTCAGCTTCATAAACATAGCTCAAGAGTGTTGCCTGAAAATAATCATGTTGATGCACATCCACTGCCCCTTCCTCCTAGAGCGTCACCACCACCAGCACAGTCACCTCCCCAGCATCAACCAAGTATCGTGCACCTCACTGTAGATAATTCGCCTTCAATGAAAGGTCAATGGCAGAAAGGAAAACTTATAGGGCGGGGATCATATGGATCTGTTTATCACGCAACCAACTTGTATGTCCTTCATCTTTACTTTCGTTGCCTTCATGGGAGGCTGCAACTGCGGTCACAGAAACCCCCAAGGCCTCCATTTTTGTATGACTGTGGACTAGAGACTGGAGCCTCGTGTGCAATGAAGGAGGTGGAAATGTTCCCCGATGATCCTAAATCTGCTGACTGCATAAAGCAACTTGAACAGGCTGGTGTTGAGCCTGGTGTTCTGAATGGTCTCATGTTTCAGGAAATTAGAATTCTCCGTCAATTACACCATCCCAACATTGTGCAGTACTATGGAAGTGAATTAGATGGCGATCGACTGTACATATATATGGAGTATGTTCATCCTGGATCGCTTGATAAGTTTATGCATGACCATTGTGGAGCTATGACAGAATCTGTAGTTCGCAACTTCACAAGACATATTCTCTCTGGATTGGCATACTTGCATAGTACCAAGACTATTCACAGGGATATCAAAGGTGCAAACTTGTTGGTCGATGCAACGGGCATGATTAAACTTGCGGATTTCGGGGTTTCAAAAATTCTGACAGAGAAATCATATGAACTTTCATTGAAGGGTAGTCCCTACTGGATGGCTCCCGAGCTCATGAAGGCTGCCATAAAGAAAGAATCCAGTCCTGATGTTGCCATGGCCATTGATATATGGAGCTTAGGGTGCACTATCATCGAAATGCTGACAGGAAAACCTCCTTGGAGGGAATACGAAGGGCCGCAAGCCATGTTCAAGGTACTGCACAAATCCCCAAAAATACCTGAAAATTTGTCATCAGATGGACAGGATTTCCTTCAGCAGTGCTTCAGAAGGAATCCGGCAGATCGACCATCGGCAGCACTGCTTCTTACTCATGCCTTTGTACAAAATTTGCACGATCAAGATGCTCTTCATTCACAAGGGCAAAGCTGTCCCAGAGGAGACCCTGGATCTGGAGATGATTCAAGTAGACATAGTCCTGCTAACAGTTCAAGAAGTAATAACCGGGGAGTGCCATCCTCCATCGGCGCCCGGTTTATGCATAAAATTCAAAATTTAATAGGTGACACTTCGAAAAAATATGACAGCGAGGAATCTAATCATGTTACTTCTTCTCGTAGCTCTCCTTGCTCGATGACAGAAATAAACAGTCCTTCCAGCAACATACCCCTCACCACCATTATGAGAATCATCAGGCACATTTGA 1809 0.45 MKPATFSCMIEEQHKSVFLSGLCTHGGSKCHPGLSNTSSCKDHTEHSQDNDSENVSDLRLHFSAKSAPNSIFSSPVTSPRRSSNVDFYDPSIIFHQDFNDILRVSPVKTAQSPDRTPLRSPGSLLNPEGCQSQLHKHSSRVLPENNHVDAHPLPLPPRASPPPAQSPPQHQPSIVHLTVDNSPSMKGQWQKGKLIGRGSYGSVYHATNLYVLHLYFRCLHGRLQLRSQKPPRPPFLYDCGLETGASCAMKEVEMFPDDPKSADCIKQLEQAGVEPGVLNGLMFQEIRILRQLHHPNIVQYYGSELDGDRLYIYMEYVHPGSLDKFMHDHCGAMTESVVRNFTRHILSGLAYLHSTKTIHRDIKGANLLVDATGMIKLADFGVSKILTEKSYELSLKGSPYWMAPELMKAAIKKESSPDVAMAIDIWSLGCTIIEMLTGKPPWREYEGPQAMFKVLHKSPKIPENLSSDGQDFLQQCFRRNPADRPSAALLLTHAFVQNLHDQDALHSQGQSCPRGDPGSGDDSSRHSPANSSRSNNRGVPSSIGARFMHKIQNLIGDTSKKYDSEESNHVTSSRSSPCSMTEINSPSSNIPLTTIMRIIRHI 602
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g03341 602 MobiDBLite consensus disorder prediction 154 169 - -
Vimu10g03341 602 MobiDBLite consensus disorder prediction 105 186 - -
Vimu10g03341 602 Gene3D Transferase(Phosphotransferase) domain 1 319 518 - -
Vimu10g03341 602 MobiDBLite consensus disorder prediction 105 139 - -
Vimu10g03341 602 MobiDBLite consensus disorder prediction 569 586 - -
Vimu10g03341 602 MobiDBLite consensus disorder prediction 523 541 - -
Vimu10g03341 602 MobiDBLite consensus disorder prediction 170 186 - -
Vimu10g03341 602 SUPERFAMILY Protein kinase-like (PK-like) 187 545 IPR011009 -
Vimu10g03341 602 MobiDBLite consensus disorder prediction 558 586 - -
Vimu10g03341 602 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 50 521 - -
Vimu10g03341 602 ProSiteProfiles Protein kinase domain profile. 189 496 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu10g03341 602 Gene3D Phosphorylase Kinase; domain 1 169 316 - -
Vimu10g03341 602 SMART serkin_6 189 496 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu10g03341 602 Pfam Protein kinase domain 280 495 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu10g03341 602 MobiDBLite consensus disorder prediction 504 542 - -
Vimu10g03341 602 MobiDBLite consensus disorder prediction 36 55 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g03341 Vimu-Chr10 43525132 43529083 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g03341 149 498 MAP Kinase Kinase Kinase AT5G66850 57.263 1.73e-137 414
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Vimu10g03341 Pkinase 1.8e-57 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g03341 10 43525132 43529083 Vimu10g03341 10 43525132 43529083 ECH
Vimu1g03038 1 42798420 42803404 Vimu10g03341 10 43525132 43529083 PCT