Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g03338 ATGGAAGCTATCAACAGAACCTCCTCCACCGCCTCTTCTTCCTCTGACTCTTCCTCTTCCGACTCCAACCCTCACAGAATCAAAGGCCCCTGGAGCGCCGAGGAGGATCGGATCCTCACCCGCCTCGTCGACCGCTACGGACCTCGCAACTGGTCCCTCATCAGCCGCTACATTAAAGGCAGGTCTGGCAAGTCCTGCCGCCTCCGCTGGTGCAACCAGCTCAGCCCCACCGTCCAGCACCGGCCCTTCTCTCCCCAAGAGGACGAGACCATCATCGCCGCCCACGCCCAGTACGGAAACAGGTGGGCCACCATTGCCCGTTTGCTGCCGGGTCGAACCGATAACGCCGTTAAGAACCACTGGAACTCCACGCTCAAGCGCAGAGCCAAGGCTTTTCTTGACATTAATGTCAACAACGCCAACAACGAAGGAGCCACTTCTTCTGCTCCTTCTCGCTCCTTCGAGGACGACCCGTTGACCGCGTTGACTCTCGCTCCCCCCGGTCTCTCTAGCGCCGCCGTGGCCGAGGACACCGTGCTGGATCACCGGGTCTCGGCCGAGAGTGCGCCGGCGGGGTTTTGGGATATGATGAGAGATGTGATCGCGAGGGAAGTGAGGGAATATGTGTCTTCCAATTTTTCTGATAACTCGAACTTTCATTAA 663 0.5867 MEAINRTSSTASSSSDSSSSDSNPHRIKGPWSAEEDRILTRLVDRYGPRNWSLISRYIKGRSGKSCRLRWCNQLSPTVQHRPFSPQEDETIIAAHAQYGNRWATIARLLPGRTDNAVKNHWNSTLKRRAKAFLDINVNNANNEGATSSAPSRSFEDDPLTALTLAPPGLSSAAVAEDTVLDHRVSAESAPAGFWDMMRDVIAREVREYVSSNFSDNSNFH 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g03338 220 Gene3D - 27 79 - -
Vimu10g03338 220 PANTHER MYB PROTEIN-RELATED 28 148 - -
Vimu10g03338 220 CDD SANT 82 125 IPR001005 -
Vimu10g03338 220 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 79 129 IPR017930 -
Vimu10g03338 220 ProSiteProfiles Myb-like domain profile. 75 125 IPR001005 -
Vimu10g03338 220 MobiDBLite consensus disorder prediction 141 160 - -
Vimu10g03338 220 FunFam MYB transcription factor 28 79 - -
Vimu10g03338 220 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 23 78 IPR017930 -
Vimu10g03338 220 CDD SANT 30 72 IPR001005 -
Vimu10g03338 220 Gene3D - 81 151 - -
Vimu10g03338 220 MobiDBLite consensus disorder prediction 1 26 - -
Vimu10g03338 220 MobiDBLite consensus disorder prediction 1 31 - -
Vimu10g03338 220 Pfam Myb-like DNA-binding domain 31 89 - -
Vimu10g03338 220 SUPERFAMILY Homeodomain-like 25 121 IPR009057 -
Vimu10g03338 220 SMART sant 27 76 IPR001005 -
Vimu10g03338 220 SMART sant 79 127 IPR001005 -
Vimu10g03338 220 ProSiteProfiles Myb-like domain profile. 23 74 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g03338 Vimu-Chr10 43509992 43510654 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g03338 26 143 MYB Transcription Factor Family AT3G50060 69.492 1.16e-59 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vimu10g03338 Myb_DNA-bind_6 1.2e-16 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g03338 10 43509992 43510654 Vimu10g03338 10 43509992 43510654 ECH
Vimu1g03037 1 42793296 42795051 Vimu10g03338 10 43509992 43510654 PCT