Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g03328 ATGCAACCTACATCGAACGGTTCTGATTCGCAAGCAACGGAGCAGAACCAGCAGACGCCGCCTCCGCCTCCGCCGCCACCGCCGCAGCCTGTGCCCGTCCCGCCGCAGTGGCTCCCGATGCAGTACCCAGCGGCTGCCATGGTAATGCAGCACCACATGATGCCGCCTCAACATTATGCCGCGCCGCCGCCGCCTCCGCAGCCCTATGTCGCCTATCACCAGTACCAGCAGCAGCTCTCGCACGTGTCGCACGCGCACCATCAGGGATCCAGCGCCGAGAACAAGACCGTATGGGTCGGCGATTTGCATCACTGGATGGATGAAAATTATCTCCACCGCTGTTTCGCTTCTACCGGCGAGATTTCCTCCATTAAGGTTATTCGAAATAAGCAGACTGGTCTATCAGAGGGTTATGGATTTGTTGAATTCTATTCGCATGGCACAGCTGAGAAAGTTTTGCAGAATTATGCTGGGATATTGATGCCTAACACAGAGCAACCTTTCCGCCTGAACTGGGCATCATTTAGCACAGGAGACAAGCGTTCAGATAATGTCCCTGATCTTTCTATTTTTGTAGGAGATTTAGCTGCTGATGTTACAGATAGCATGTTGCATGAAACTTTTTCTAATAGATACCCATCTGTTAAAGCTGCAAAAGTTGTTTTTGATGCCAATACTGGCCGTTCAAAGGGTTATGGTTTCGTCAGGTTTGGAGATGATAATGAGAGGTCTCAGGCTATGACTGAAATGAATGGAGTTTACTGCTCTAGCAGGCCTATGCGTATTGGTGCTGCAACTCCTAGGAAAACGTCTGGCTATCAACAAGGAAGTCAGTCAAATGGCACATCCAACCAATCTGAAGCTGATTCTACGAACACAACTATATTTGTCGGAGGTCTTGACCCTAATGTTACTGCTGAAGATCTTAGGCAGCCATTCTCCCAGTATGGTGAGATAGTCTCTGTTAAGATACCTGTTGGAAAAGGATGTGGTTTTGTACAATTTGCAAACAGAAATAATGCTGAAGAGGCATTGCAGAAGCTAAATGGGACAACTATTGGCAAGCAAATGGTTCGTCTTTCGTGGGGCCGCAATCCAGCAAATAAGCAGTTTAGAGGAGATTTCGGTAGTCCTTGGAATGGGGCATATTACGGGGGAGCTGTTTATGATGGTTATGGGTATGCTTTACCAGCTCCTCATGATCCCAGTATCTATGCTGCTGCGTATGGGGCATACCCTATTTATGGAGGACACCAGCAGCAAGTAAGTTAA 1272 0.4835 MQPTSNGSDSQATEQNQQTPPPPPPPPPQPVPVPPQWLPMQYPAAAMVMQHHMMPPQHYAAPPPPPQPYVAYHQYQQQLSHVSHAHHQGSSAENKTVWVGDLHHWMDENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHGTAEKVLQNYAGILMPNTEQPFRLNWASFSTGDKRSDNVPDLSIFVGDLAADVTDSMLHETFSNRYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTEMNGVYCSSRPMRIGAATPRKTSGYQQGSQSNGTSNQSEADSTNTTIFVGGLDPNVTAEDLRQPFSQYGEIVSVKIPVGKGCGFVQFANRNNAEEALQKLNGTTIGKQMVRLSWGRNPANKQFRGDFGSPWNGAYYGGAVYDGYGYALPAPHDPSIYAAAYGAYPIYGGHQQQVS 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g03328 423 MobiDBLite consensus disorder prediction 1 37 - -
Vimu10g03328 423 MobiDBLite consensus disorder prediction 264 296 - -
Vimu10g03328 423 Gene3D - 175 277 IPR012677 -
Vimu10g03328 423 FunFam Polyadenylate-binding protein RBP47C isoform A 187 263 - -
Vimu10g03328 423 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 87 369 - -
Vimu10g03328 423 CDD RRM2_SECp43_like 187 266 - -
Vimu10g03328 423 SMART rrm1_1 294 361 IPR000504 GO:0003723
Vimu10g03328 423 SMART rrm1_1 96 171 IPR000504 GO:0003723
Vimu10g03328 423 SMART rrm1_1 189 263 IPR000504 GO:0003723
Vimu10g03328 423 CDD RRM1_SECp43_like 96 176 - -
Vimu10g03328 423 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 188 267 IPR000504 GO:0003723
Vimu10g03328 423 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 293 365 IPR000504 GO:0003723
Vimu10g03328 423 MobiDBLite consensus disorder prediction 268 296 - -
Vimu10g03328 423 Gene3D - 94 174 IPR012677 -
Vimu10g03328 423 Gene3D - 278 395 IPR012677 -
Vimu10g03328 423 FunFam Polyadenylate-binding protein RBP47C isoform A 94 174 - -
Vimu10g03328 423 MobiDBLite consensus disorder prediction 17 37 - -
Vimu10g03328 423 SUPERFAMILY RNA-binding domain, RBD 64 175 IPR035979 GO:0003676
Vimu10g03328 423 FunFam Polyadenylate-binding protein RBP47 278 395 - -
Vimu10g03328 423 MobiDBLite consensus disorder prediction 1 16 - -
Vimu10g03328 423 CDD RRM3_NGR1_NAM8_like 292 363 - -
Vimu10g03328 423 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 295 356 IPR000504 GO:0003723
Vimu10g03328 423 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 97 164 IPR000504 GO:0003723
Vimu10g03328 423 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 190 259 IPR000504 GO:0003723
Vimu10g03328 423 SUPERFAMILY RNA-binding domain, RBD 171 282 IPR035979 GO:0003676
Vimu10g03328 423 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 95 175 IPR000504 GO:0003723
Vimu10g03328 423 SUPERFAMILY RNA-binding domain, RBD 283 393 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g03328 Vimu-Chr10 43400350 43404296 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g03328 97 372 Eukaryotic Initiation Factors Gene Family AT4G34110 28.622 1.43e-28 116
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g03328 10 43400350 43404296 Vimu10g03328 10 43400350 43404296 ECH
Vimu1g03031 1 42751513 42753943 Vimu10g03328 10 43400350 43404296 PCT