Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g03325 ATGGAGAGATCAAAGTCATCCCTTCTACAGATTCAGCCTCCAACCTATGGAAACTTAGTCACAATTCTCAGCATCGATGGAGGTGGCATCAGGGGCATTATCCCCGCAACTATTCTTGCTTTCCTTGAAGCACAACTTCAGGAATTGGACGGTGAGGATGCAAGGCTTGCAGACTATTTTGATGTGATTGCAGGAACAAGCACAGGTGGTCTTGTAACCGCCATGTTAACTGCTCCAAATGATCGTCAGCGTCCTTTATTTGCTGCCAAGGATATCAGGCCCTTTTACTTGGATCACCTTCCAAAGATTTTCCCACAACGCAGTGGCATATGGGGATGGATAGAAAAGATGGTGAGATCATTAGGAGGACCAAAATACGATGGAAAATACCTTCGAGAAGTGGTGAGAGAGAAGCTGGGGGAGACACGTTTGCATGAAACGCTGACCAATATTGTGATTCCCACCTTTGACATCAAGTCACTGCAGCCGATCATTTTCTCCTCGTACCAAATCAAGATGTCTCCTTATTTGGATGCTCCACTCTCTGACATATGTATCAGCACTTCTGCCGCACCAACTTATCTTCCAGCCCACAGCTTCAAGAACAAAGATTCAGAAGGGAACGTGCACGAATTCAACCTTATTGATGGTGGCGTTTGTGCTAATAATCCGAGCTTAGTAGCCATGAACCAGTTAACCAAGCAGATCATTAATGACAATCCTGACTTCTTCTCCATCAAGCCAATGGAATATGGTCGTTTCCTGATAATCTCTCTGGGTACCGGGACTCCCAAGAATGAACACAAATTCAATGCTAAAATAGCAGCAAAATGGGGTCTACTCGATTGGTTAACTAACAGTGGTTCCTCTCCGTTGATCGATGTTTTAACTCACTCCAGTGGAGATATGGTTGATTTCCATCTTGCTACTGTCACCCAGGCTCTTAATTCAGAAAAAAATTACCTTCGTATACAGGATGATACATTGACCGGTACAGATGCTTCAACTGATATTGCCACGAAAAAAAATATGGAAAAACTTAGCCAAATTGGTGAGAAGTTGTTGAAGAAACCAGTATCTCAGATCAATTTGGAGACTGGTTTGTTTGAACCCTTGGGAGATGGGGAGACCAACGAAGATGCTCTCAGAAGGTTTGCGAAAATGCTTTCAGAAGAGAGAAGTTTCAGAGAATCAAAATCCCCTCACACTAACAAGTCCCTTACAAATAGTTAG 1233 0.4339 MERSKSSLLQIQPPTYGNLVTILSIDGGGIRGIIPATILAFLEAQLQELDGEDARLADYFDVIAGTSTGGLVTAMLTAPNDRQRPLFAAKDIRPFYLDHLPKIFPQRSGIWGWIEKMVRSLGGPKYDGKYLREVVREKLGETRLHETLTNIVIPTFDIKSLQPIIFSSYQIKMSPYLDAPLSDICISTSAAPTYLPAHSFKNKDSEGNVHEFNLIDGGVCANNPSLVAMNQLTKQIINDNPDFFSIKPMEYGRFLIISLGTGTPKNEHKFNAKIAAKWGLLDWLTNSGSSPLIDVLTHSSGDMVDFHLATVTQALNSEKNYLRIQDDTLTGTDASTDIATKKNMEKLSQIGEKLLKKPVSQINLETGLFEPLGDGETNEDALRRFAKMLSEERSFRESKSPHTNKSLTNS 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g03325 410 CDD Pat17_isozyme_like 17 367 - -
Vimu10g03325 410 Gene3D Cytosolic phospholipase A2 catalytic domain 10 402 - -
Vimu10g03325 410 PANTHER XYLOSE ISOMERASE 6 399 - -
Vimu10g03325 410 FunFam Patatin 12 401 - -
Vimu10g03325 410 ProSiteProfiles Patatin-like phospholipase (PNPLA) domain profile. 23 229 IPR002641 GO:0006629
Vimu10g03325 410 SUPERFAMILY FabD/lysophospholipase-like 18 367 IPR016035 -
Vimu10g03325 410 Pfam Patatin-like phospholipase 23 228 IPR002641 GO:0006629
Vimu10g03325 410 MobiDBLite consensus disorder prediction 390 410 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g03325 Vimu-Chr10 43385698 43387907 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g03325 1 403 Miscellaneous Gene Families AT2G26560 62.283 0.0 512
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g03325 10 43385698 43387907 Vimu10g03325 10 43385698 43387907 ECH
Vimu1g03024 1 42677205 42679367 Vimu10g03325 10 43385698 43387907 PCT