Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g03270 ATGAAAAGAAGAAGGCAATTTGGGAATACGCACCCAGCCTTCTTTCCTTCCTTCGTAGTTGATAAGGAATCTGAAGTGTCCAAGTCAGGGACAACAACTCTCATGCATCCGAAACGACCGCCGGTGCATGGTGGCGCAGGTGTGGATCCTAATCTCCCACCTCACCGTCAGGAGCAAGCCAAACAACTCCTTACTCGCTGTCTTAATCTTGGCATCTCTGCCCTTCGTTCCAATGCTTCCGCCATCGACGTTGTCGAACTTGTCGTACGGGAACTGGAAACGGATCCCCTGTTTAACTCGGGTCGAGGATCCGCCCTGACAGAAAAGGGAACAGTGGAAATGGAGGCAAGTATCATGGATGGTTCCAAGAGACGATGCGGAGCCGTTTCGGGCCTCACCACCGTCAAAAACCCCATCTCACTCGCTCGCCTTGTCATGGACAAGTCTCCACATTCCTACCTCGCCTTTAATGGCGCTGAAGAATTCGCCAGACAACAGGGTGTGGAGGTAGTGGAGAACGAATACTTCATTACTCCTGAAAATGTCGGAATGCTGAAACTGGCAAAGGAGGCAAACACAATCCTGTTTGATTATCGGATTCCAACGGCTGGATACGATAGTTGCGGTGTGGGGGCCGAGAGTCCGTTGCAGATGAATGGACTGCCAATAAGCGTGTATGCGCCGGAGACGGTGGGGTGTGTGGTGGTGGACAAGGAGGGGAGGTGTGCGGCTGCAACGTCGACAGGGGGTTTGATGAACAAGAAGAGTGGAAGAATCGGTGACTCGCCTCTGATAGGTGCAGGGACTTACGCTTGTGGAGTGTGTGGGGTTTCGTGCACTGGGGAAGGTGAGGCCATCATACGAGGCACGCTGGCGCGTGAGGTGGCAGCAGTGATGGAATACAAAGGACTGTCACTGCAGCAGGCTGTGGACTTTGTGATCAAGCACCGCCTGGACGAAGGGAAAGCAGGGCTGATCGCCGTCTCAAATACCGGTGACGTCGCTTATGGCTTCAACTGTAACGCCATGTTCAGGGGCTGCGCCACCGAGGACGGATTCATGGAGGTCGGAATCTGGGACTAG 1083 0.5392 MKRRRQFGNTHPAFFPSFVVDKESEVSKSGTTTLMHPKRPPVHGGAGVDPNLPPHRQEQAKQLLTRCLNLGISALRSNASAIDVVELVVRELETDPLFNSGRGSALTEKGTVEMEASIMDGSKRRCGAVSGLTTVKNPISLARLVMDKSPHSYLAFNGAEEFARQQGVEVVENEYFITPENVGMLKLAKEANTILFDYRIPTAGYDSCGVGAESPLQMNGLPISVYAPETVGCVVVDKEGRCAAATSTGGLMNKKSGRIGDSPLIGAGTYACGVCGVSCTGEGEAIIRGTLAREVAAVMEYKGLSLQQAVDFVIKHRLDEGKAGLIAVSNTGDVAYGFNCNAMFRGCATEDGFMEVGIWD 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g03270 360 SUPERFAMILY N-terminal nucleophile aminohydrolases (Ntn hydrolases) 42 357 IPR029055 -
Vimu10g03270 360 FunFam Isoaspartyl peptidase/L-asparaginase 230 360 - -
Vimu10g03270 360 CDD Asparaginase_2 42 352 - -
Vimu10g03270 360 Gene3D (Glycosyl)asparaginase 230 360 - -
Vimu10g03270 360 PANTHER L-ASPARAGINASE 42 346 IPR000246 GO:0016787
Vimu10g03270 360 Pfam Asparaginase 42 359 IPR000246 GO:0016787
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g03270 Vimu-Chr10 42959934 42962000 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g03270 42 309 Miscellaneous Gene Families AT4G00590 28.866 2.54e-16 77.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g03270 10 42959934 42962000 Vimu10g03270 10 42959934 42962000 ECH
Vimu1g02955 1 41911556 41913086 Vimu10g03270 10 42959934 42962000 PCT