Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g03257 ATGGAGACTCGTGCCGCCTCAAAGAGAAAGGCAAATGCAATGGTGTTGGTCCAAAAACAACACCCCAAAAGGCATAGGGTTGCTTTGGCTGAACTCCCCAATTTACCAAATCATATTGTTCCAGGAACTCGAAATCCTTTGAAAGAGAAATCGCGAAGTGTGAAGAATCTCAATGCGAAGAAGCCATCTCCCACAACCGATCAATCTTCTTCCCTGCATATTGATGAATCCCTTGTTTCTGATGTCTACGAGTATCTTCATGAGATGGAGATGCAGAAAAAGAGGAGACCAATGGTTGACTACATGGAGAAAGTTCAGAAGCTAATTACACCAACCATGAGAGCAATCTTGGTGGATTGGTTAGTAGAAGTGGCTGAGGAGTACAAGCTTCTTCCGGACACTCTTCATTTATCTGTTTCATACATTGATAGGTTTTTGTCGGCTAATCCTGTGATTAAATCAAGACTTCAGTTGCTCGGTGTTTCTTCCATGCTCATTTCATCTAAATATGAGGAAATGGATCCACCTTGTGTGAATGATTTTTGCAGTATCACTGATTACACATATGACAAGGCAGAGGTTGTTAAGATGGAAGCTGACATATTGAAGTCACTGAACTTTGAAATGGGAAATCCTACTGTGAACACCTTTCTCAGGAGGTTTGTTGATGTTGTTTCTGACAATGAAACTACTCCAAATTCACAGATTGAATTTTTGGGCCGCTATCTTGCTGAATTAAGCTTGTTGGACTATGATTGTTTGAGATTTTTGCCTTCTGTTGTGGCAGCGTCAGCTGTATTTCTTTCCAGGTTTATTATCACGCCTGAACTGCATCCATGGACTCCTTCTTTGAATGAATGTTCAGGTTACAAACCACCTGAACTGAAAGAATGTGTCCTAAGCTTGCATGATCTGTACTTGTTACGAAAGGCAGCATCCTTCAAAGCTGTCCGGAATAAGTACAAGCAACAAAAGGTGATTATTCTTATATTTGGTTATTCAAATGTGTTGCAAACCTGCCTTCCCCTCCTTATGTACCGAATTGTTACTTTGAAGACCAGCGATGCAGCAAATTGTGATGAATATATCTCAGTTGCTATCTCTTAA 1107 0.4056 METRAASKRKANAMVLVQKQHPKRHRVALAELPNLPNHIVPGTRNPLKEKSRSVKNLNAKKPSPTTDQSSSLHIDESLVSDVYEYLHEMEMQKKRRPMVDYMEKVQKLITPTMRAILVDWLVEVAEEYKLLPDTLHLSVSYIDRFLSANPVIKSRLQLLGVSSMLISSKYEEMDPPCVNDFCSITDYTYDKAEVVKMEADILKSLNFEMGNPTVNTFLRRFVDVVSDNETTPNSQIEFLGRYLAELSLLDYDCLRFLPSVVAASAVFLSRFIITPELHPWTPSLNECSGYKPPELKECVLSLHDLYLLRKAASFKAVRNKYKQQKVIILIFGYSNVLQTCLPLLMYRIVTLKTSDAANCDEYISVAIS 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g03257 368 SMART cyclin_7 119 203 IPR013763 -
Vimu10g03257 368 SMART cyclin_7 216 304 IPR013763 -
Vimu10g03257 368 PANTHER CYCLINS 62 323 IPR039361 -
Vimu10g03257 368 MobiDBLite consensus disorder prediction 57 71 - -
Vimu10g03257 368 FunFam G2/mitotic-specific cyclin 97 208 - -
Vimu10g03257 368 SUPERFAMILY Cyclin-like 212 326 IPR036915 -
Vimu10g03257 368 Gene3D - 81 326 - -
Vimu10g03257 368 SMART Cyclin_C_2 212 330 IPR004367 -
Vimu10g03257 368 FunFam Cyclin superfamily protein, putative 209 281 - -
Vimu10g03257 368 ProSitePatterns Cyclins signature. 114 145 IPR006671 -
Vimu10g03257 368 Pfam Cyclin, N-terminal domain 81 209 IPR006671 -
Vimu10g03257 368 CDD CYCLIN_AtCycA-like_rpt2 212 325 - -
Vimu10g03257 368 Pfam Cyclin, C-terminal domain 212 326 IPR004367 -
Vimu10g03257 368 SUPERFAMILY Cyclin-like 79 209 IPR036915 -
Vimu10g03257 368 MobiDBLite consensus disorder prediction 37 71 - -
Vimu10g03257 368 Gene3D - 95 210 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g03257 Vimu-Chr10 42863777 42865523 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g03257 3 325 Core Cell Cycle Gene Families AT5G43080 55.183 5.41e-117 342
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g02950 1 41840844 41843914 Vimu10g03257 10 42863777 42865523 PCT