Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g03239 ATGGCGTCCAGTTTTGATCGATGGGAAAAAGATCCTTTCTTTAGTGCTGCCGAAGAAGTTCAGGAATCTTCTGACAGCTTTGGCTCTGGTACAAGATCAAGGTTTCCTCACAAGCTTCGGCTTCCTGGGTTGACTTTGAATGGCTTTGAAACTAATTGTGGGATGGAATCTATCTATAGAACATGGATTCACGCAATGAAGGATGCATCCAGCCTTTGGAACTGTGATGAAGCCCGCCGAGATCTACAATCTGCCATTGGCACTGCTAAATGGCAGTTAGAGGAATTTGAACGGGCTGCTCAGTCAAGTTATAGCAAAGTTTCAACCGAGGATGCGAGAAATAGACACCGAGATTTTGTTGATGCCATCCGTGAAAAGATCAGCAATGTTGAAAATTTGTTACTAAAACCAGTTCATTCAGGTAGCAAGGCATCTCTGCCTTGGCCACGTCTGGATGAAGGAGAACGTGATGAACTCGCATCATTTCTTTCGGGAACATCGGCTGCGGTTTGCAAAAATCCTGTGAAATGTACCAGCAGAGATGGTGAAAATGTGCAGTTAAGTGACAAAGATTCTATCCCTAATTGTTCAAGTAATTTACATGTTTCATCTGGGTGGGGTTCGTCTGATGCAGCACAAGAAAAGTCACTTGGGCATCGCAGGGCAGCTAGTGCTGATCCTGACATTGGTTATTGGCAAATCACTGTTTCTGATGGTGTGCAAGAATCAAATTCCTCCAATGGTTCTTCCAGTCTAAATCTAAATCCTGTGCACAAGGTAGCAAGTCTCTCTGGATTTTTTGGTTCCGTGGAAACTATCTCTAAGTTGAAGTGGCCTAAGAATGGTTATAGAAAGCTGAAACCAGTGAATCATCGTGAAGAAACGGATAATGCACTATTACCATCAGTTGGATTGAATGGGGGCATCAATGCATACTATGAAGAAAGTAAGACTTGCCTTGATAATTATGATGAATCTTATGATAAGCAACTCCACGGGTGGTACGGGGCTTTGCAAAGGCAGCTTCAAAGATCTCAATACCAAATGCAATACAATCGGCATGTTCAAATAACTATCTGGGCTGTTATTCTCCTTTGCTTTATCGGCCATCCGCGCTACCTTGATCATCCCTTGATCATGAAACTATTTTCGTCTCTTTTTACTCCTGATTCCTTTGTTTATGAAAGGCAGAAGGCTCCTTCTTGGTGCTCTTCGTTCCTTTCTATGGTGGGGAGACGGTACATCCAAATGCCATATGAGAGTGATGCTAAATGTGAATTTTCATTGCTTTTTGCACGATGTAGAAAGGAAGATTTTGTTCCATTATCTATCACTTTCCGGAATGCGGCGGGCAGAATCAGGAAGAGTGTTCTATTCCCTCTTCGCTTTTGTACTGTATCAGGAGATCCAGATGTACAGGACTAA 1425 0.4281 MASSFDRWEKDPFFSAAEEVQESSDSFGSGTRSRFPHKLRLPGLTLNGFETNCGMESIYRTWIHAMKDASSLWNCDEARRDLQSAIGTAKWQLEEFERAAQSSYSKVSTEDARNRHRDFVDAIREKISNVENLLLKPVHSGSKASLPWPRLDEGERDELASFLSGTSAAVCKNPVKCTSRDGENVQLSDKDSIPNCSSNLHVSSGWGSSDAAQEKSLGHRRAASADPDIGYWQITVSDGVQESNSSNGSSSLNLNPVHKVASLSGFFGSVETISKLKWPKNGYRKLKPVNHREETDNALLPSVGLNGGINAYYEESKTCLDNYDESYDKQLHGWYGALQRQLQRSQYQMQYNRHVQITIWAVILLCFIGHPRYLDHPLIMKLFSSLFTPDSFVYERQKAPSWCSSFLSMVGRRYIQMPYESDAKCEFSLLFARCRKEDFVPLSITFRNAAGRIRKSVLFPLRFCTVSGDPDVQD 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g03239 474 SUPERFAMILY t-snare proteins 55 132 IPR010989 GO:0016020|GO:0016192
Vimu10g03239 474 CDD SNARE_NTD_STX6-like 11 132 - -
Vimu10g03239 474 MobiDBLite consensus disorder prediction 203 222 - -
Vimu10g03239 474 Gene3D - 9 135 - -
Vimu10g03239 474 Pfam Syntaxin 6, N-terminal 55 131 IPR015260 GO:0016020|GO:0048193
Vimu10g03239 474 PANTHER OS05G0443700 PROTEIN 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g03239 Vimu-Chr10 42778266 42781280 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g03239 10 42778266 42781280 Vimu10g03239 10 42778266 42781280 ECH
Vimu1g02946 1 41792136 41794401 Vimu10g03239 10 42778266 42781280 PCT