Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g03234 AACGGCGGAGGTAGGACCCACGAGTGCTCCATATGCCACAAAACTTTCCCCACGGGACAGGCCTTGGGAGGACACAAACGTTGTCACTACGAAGGCGGCGGCGGCGGCGGTGGTAACAGCGCCGTAACCGCTTCCGAAGGTGTGGGGTCCACTCACACAGGAAGCCACCGCGATTTCGATCTGAACCTGCCGGCTTTTCCGGACTTTCCAACGAGGTTCTCTGTGGATGAAGAGGTTTCCAGCCCCCACCCATCGAAGAAGCCCCGTCTCCATCTGACCATCCCCAAGATTGAAATCCCTAGGTGCTGA 309 0.5858 NGGGRTHECSICHKTFPTGQALGGHKRCHYEGGGGGGGNSAVTASEGVGSTHTGSHRDFDLNLPAFPDFPTRFSVDEEVSSPHPSKKPRLHLTIPKIEIPRC 102
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g03234 102 Pfam C2H2-type zinc finger 7 30 - -
Vimu10g03234 102 SUPERFAMILY beta-beta-alpha zinc fingers 3 31 IPR036236 -
Vimu10g03234 102 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 5 65 IPR044653 GO:0003700
Vimu10g03234 102 MobiDBLite consensus disorder prediction 34 56 - -
Vimu10g03234 102 ProSitePatterns Zinc finger C2H2 type domain signature. 9 29 IPR013087 -
Vimu10g03234 102 ProSiteProfiles Zinc finger C2H2 type domain profile. 7 29 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g03234 Vimu-Chr10 42753924 42755561 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g03234 4 99 C2H2 Transcription Factor Family AT1G27730 52.041 2.26e-27 98.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g03234 10 42753924 42755561 Vimu10g03234 10 42753924 42755561 ECH
Vimu1g02935 1 41689041 41691483 Vimu10g03234 10 42753924 42755561 PCT