Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g03221 ATGTTGTGCGCCTGTTCTTCCGGTGAACAGTTCAAATTCGAAGAGCCGCCGCAGTCGCCGGACTCCCTCGCCACCAGGGATTTCTCCGCCAGCGGACTCTCTTCGAGGACCACCGCGGAATGGGAGCCTAAATTCGATGAAACGCAAGTAGAACAAGCTGAATCTACTCTTAAAGAAGCTCTTTCCTTAAACTATGAGGAGGCCAGGGCTTTATTGGGGAGACTTGAATACCAAAGAGGGAATTTCGATGCTGCACTTCAAGTGTTTCAGGGTATAGACATCAAGGGTTTGACCCCGAGAATGATCAAGGCTATTGCTGAAAGAATCAAGCATAGGAAACCACGTTCTAAGGCAGATATCGTGGTTTCAAATGTGATGTCATTGCACTCTGTTAGCCTGCTTCTTGAGGCAATTTTGCTTAAAGCAAGGTCACTGGAGGAACTTGGGGAATGCATTGAGGCTGCAAAGGAGTGCAGAATAATTCTTGATACAGTTGAATCTGCTCTTCCAAATGGAATGCCTGAGGGTATTGGAGAAGATTGTAAGTTGCAAGAGATGTTTCATAAAGCATTGGAATTACTTCCAAGGCTTTGGATCAAAGCGGGATTTCTGGATGAAGCTGTAGCTGCATATCGTCGTGCTCTGGTTAAGCCATGGAGTTTGGAGCCACAAAGGTTGGCTTCTGTAGAAAAGGATTTAGCTACGATACTACTCTATGGAGGTGTAGAAGTTAGCTTATCCTCTCAGCAGCAGGTGTGGGGTAAAACAACTCCTGCCAACAGTATTGAAGAAGCGATACATTTGCTAGTAATACTCATGAGCAAGGTGGCAATTGGGGAAATAGACTGGGATGCTGAAATAATGGATCATCTTACGTTTGCACTTTCAGTCACTGGCATGTTTGAGCTACTTGCGGATCATGTAGAGCAGATCCTTCCAGGTATCTATAGTCGGGATGAGAGGTGGTACTTTCTTGCTCTGTGTTTTAGTGCAGCAGGACATTATGAGGTGGCATTGAACCTTTTAAGGAAGGCTTGCGGCAGTTCTGAAGCAAACCATAGACCCCATTTTCCTTCATTTTTGCTTGGAGCAAAACTCTGTTCCCTAGATCCTCGCCATGCTCACGAAGGCATTAACTTCTCACGTAAAGTTATTGAGCTAGCTAAGCATCAAAATGAGCATTTTCTGACTCAAGGCCATAAATATCTTGGAATCTGCTATGGTGCTGCGGCTAGAATTTCTGTACTGGATTCTGAAAGAAGTATATTTCAAAGAGAGTCTTTGGACTCTCTAAACCGTGCTGCCGTAAATGGAAATGATGACTTGGAAGCAATATTCAACCTTGGATTGGAAAATGCAATTCAAAGGAATCTGGATGCAGCTTACAACAGCATAATGACGTTCTCAGAAATGAGTGCTGGCAGTTCGAGAGGTTGGCAGCTATTAGCACTTATAGTATCTGCACTGCAGCGGTTTAACGATGCAGAAACTATAGTTGATTTTGCTTTAGATGAGGCTGGGGGGATGGATCAACTTGATCTTCTGAGATTGAAAGCTGTACTTCAAATTGCTCAACAGCAACCCAGGCAAGCAATAGAGACATATCGAATCTTGCTCGCGTTAATTCAAGCAAAAAAGGAGCTTTGGCTTCAAGAAAACAACATCGATCGAGAACAAGCATTCAGGCATGAGGCATTAACAGAAAAGAAGTTGGAAATAGAAACCTGGCAGGATTTGGCTACAATTTATACAGATATCGGTTCCTTGCTCGATGCAAAAACTTGTGTTGACAAGGCCCAATTGATAGAATTTTTTTCTCCAAGAAGTTGGCATATAGCAGGGGTGGTGCTTGAAGCTCAATCATTATACAGAGAAGCTTTTGTTTCCTTTTCAATATCATTGGCAGTAGAACCAGATTACATTCCCAGTATCATTTCTACCGCAGAATTATTGATGAAACTTGGTATGCAATCACTTCCAATTGCAAGAAGTTTTTTAATGAATGCTTTACGATTAGAACCTACAAACCACGATGCTTGGTTCAACCTTGGATTGATTTCAAAAATGGAAGGTTCATTACAGCAAGCAGCAGAGTTCTTTCAAGCTGCTTATGAGCTGAAGCTTTCTGCTCCAGTGCAAAAATTTAAGTAA 2151 0.4272 MLCACSSGEQFKFEEPPQSPDSLATRDFSASGLSSRTTAEWEPKFDETQVEQAESTLKEALSLNYEEARALLGRLEYQRGNFDAALQVFQGIDIKGLTPRMIKAIAERIKHRKPRSKADIVVSNVMSLHSVSLLLEAILLKARSLEELGECIEAAKECRIILDTVESALPNGMPEGIGEDCKLQEMFHKALELLPRLWIKAGFLDEAVAAYRRALVKPWSLEPQRLASVEKDLATILLYGGVEVSLSSQQQVWGKTTPANSIEEAIHLLVILMSKVAIGEIDWDAEIMDHLTFALSVTGMFELLADHVEQILPGIYSRDERWYFLALCFSAAGHYEVALNLLRKACGSSEANHRPHFPSFLLGAKLCSLDPRHAHEGINFSRKVIELAKHQNEHFLTQGHKYLGICYGAAARISVLDSERSIFQRESLDSLNRAAVNGNDDLEAIFNLGLENAIQRNLDAAYNSIMTFSEMSAGSSRGWQLLALIVSALQRFNDAETIVDFALDEAGGMDQLDLLRLKAVLQIAQQQPRQAIETYRILLALIQAKKELWLQENNIDREQAFRHEALTEKKLEIETWQDLATIYTDIGSLLDAKTCVDKAQLIEFFSPRSWHIAGVVLEAQSLYREAFVSFSISLAVEPDYIPSIISTAELLMKLGMQSLPIARSFLMNALRLEPTNHDAWFNLGLISKMEGSLQQAAEFFQAAYELKLSAPVQKFK 716
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g03221 716 PANTHER PROTEIN NPG1 1 716 IPR043376 -
Vimu10g03221 716 SUPERFAMILY TPR-like 50 394 IPR011990 GO:0005515
Vimu10g03221 716 SUPERFAMILY TPR-like 426 600 IPR011990 GO:0005515
Vimu10g03221 716 Pfam Tetratricopeptide repeat 678 707 IPR019734 GO:0005515
Vimu10g03221 716 MobiDBLite consensus disorder prediction 22 38 - -
Vimu10g03221 716 SUPERFAMILY TPR-like 564 707 IPR011990 GO:0005515
Vimu10g03221 716 Gene3D Tetratricopeptide repeat domain 565 714 IPR011990 GO:0005515
Vimu10g03221 716 SMART tpr_5 319 352 IPR019734 GO:0005515
Vimu10g03221 716 SMART tpr_5 607 640 IPR019734 GO:0005515
Vimu10g03221 716 SMART tpr_5 476 509 IPR019734 GO:0005515
Vimu10g03221 716 SMART tpr_5 512 545 IPR019734 GO:0005515
Vimu10g03221 716 SMART tpr_5 677 710 IPR019734 GO:0005515
Vimu10g03221 716 Pfam Tetratricopeptide repeat 49 91 - -
Vimu10g03221 716 Gene3D Tetratricopeptide repeat domain 44 241 IPR011990 GO:0005515
Vimu10g03221 716 Gene3D Tetratricopeptide repeat domain 259 564 IPR011990 GO:0005515
Vimu10g03221 716 ProSiteProfiles TPR repeat profile. 677 710 IPR019734 GO:0005515
Vimu10g03221 716 MobiDBLite consensus disorder prediction 5 47 - -
Vimu10g03221 716 Coils Coil 58 78 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g03221 Vimu-Chr10 42644290 42648074 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g03221 1 715 Calmodulin-binding Proteins AT1G27460 58.554 0.0 845
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g03221 10 42644290 42648074 Vimu10g03221 10 42644290 42648074 ECH
Vimu1g02914 1 41498360 41504362 Vimu10g03221 10 42644290 42648074 PCT