Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g02163 ATGCCAAACCCAAAGCATCTTCTGCAGGGTACACTGTTCCTCTCGTTACTTCTTCAGGCGGTGTGCAAATCCACCATCGAGCCATGCTCCAACTCCGACTCATGCAACGCGCTTCTCGGATACACCCTTTACACTGACCTCAAAGTCTCCGAAGTGGCCTCGCTTTTCCAAATCGACCCCATCGCGCTTCTCACTGCGAATGCCATCGACATCTCCTACCCCGACGTCGAGCATCACATCCTCCCTTCCAAACTCTTCCTCAAGATCCCCATCTCCTGCTCCTGCGTCGACGGCATTCGCAAGTCCGTCGCCACCAACTACAAGACGCGCCCCTCCGACACTCTATCCTCTATCGCCGACTCTGTCTACGGCGGCCTCGTCTCCTCCGACCAGCTGAGCGAGGCCAATTCCATTCCCGACCCCTCCGTCCTCGATGTGGGACAGAACCTCGTCGTGCCCCTTCCCTGCACCTGCTTTAACGGCTCCGACAACTCTCTCCCCGCCATTTACCTCTCTTACGTCGTTCGACCCGTTGATTCACTCGCTGCCATTGCTGCCAGGTACTTCACCACGCTTACAGATTTGATGAATGTCAATGCCATGGGAAGCACTGCCATTAATGATGGAGATATCCTTGCTGTTCCAATACCCGGTAATGATCTAATGCTTGCTTTTCTTTCTTTTTCCTTTTTTTCATTGCAATTTATAATTTCTGTTCAATTTCTAACTCTCTCTCTCTCTCTCTCTCTCTCTCGTGTTGCAGCCTGTGCTTCGAGTTTTCCTAAATCCGCCTCTGATTTTGGCTTGCTTGTCCCTAATGGGAGCTATGCCATTACCGCGGGTCACTGTGTTCAGTGTAGCTGTGGACCGAGAAACTTGAATCTGTACTGTATGCCGGCTTCTCTGGCTGTTTCTTGCTCCAGCATGCAATGTAAAGGCAGCAACCTTATGCTTGGGAATGTTACAGTGCAGCAGACTAGTGGTGGTTGCAATGTTACTTCTTGCAATTATGATGGCATTGTTAATGGCACCATAGCAACAATGTTGTCCCCTTCTCTTCAGCCTCGATGTCCTGGTCTACAGGAATTTCCTCCTCTTGTTGCCCCACCTACCACCGTTGCAAAAGACACGGTGTTTGGACCAGCGCCAGCACCATTGTTCGATGGAGCAGGTCCTACGTCGTCTATATCCTCAGTGGTTCCTTCAACGGGGCTTCCAGGATTCTCTCCTGCAAATGGTCCTATTAGCGGCATTTCTTCTGGTGCTTCTGCTACATGCTCCTTGGTGAAACCATTACCCACTTTGGCGTATGCACTCGTGATATTGCTTGTCAAGTTCATGATACCAGTGGCATTGTAA 1359 0.507 MPNPKHLLQGTLFLSLLLQAVCKSTIEPCSNSDSCNALLGYTLYTDLKVSEVASLFQIDPIALLTANAIDISYPDVEHHILPSKLFLKIPISCSCVDGIRKSVATNYKTRPSDTLSSIADSVYGGLVSSDQLSEANSIPDPSVLDVGQNLVVPLPCTCFNGSDNSLPAIYLSYVVRPVDSLAAIAARYFTTLTDLMNVNAMGSTAINDGDILAVPIPGNDLMLAFLSFSFFSLQFIISVQFLTLSLSLSLSRVAACASSFPKSASDFGLLVPNGSYAITAGHCVQCSCGPRNLNLYCMPASLAVSCSSMQCKGSNLMLGNVTVQQTSGGCNVTSCNYDGIVNGTIATMLSPSLQPRCPGLQEFPPLVAPPTTVAKDTVFGPAPAPLFDGAGPTSSISSVVPSTGLPGFSPANGPISGISSGASATCSLVKPLPTLAYALVILLVKFMIPVAL 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g02163 452 CDD LysM 107 152 IPR018392 -
Vimu10g02163 452 SMART LysM_2 106 153 IPR018392 -
Vimu10g02163 452 SMART LysM_2 172 215 IPR018392 -
Vimu10g02163 452 CDD LysM 172 214 IPR018392 -
Vimu10g02163 452 PANTHER LYSM DOMAIN-CONTAINING GPI-ANCHORED PROTEIN 2 13 361 - -
Vimu10g02163 452 ProSiteProfiles LysM domain profile. 105 152 IPR018392 -
Vimu10g02163 452 SUPERFAMILY LysM domain 171 216 IPR036779 -
Vimu10g02163 452 Pfam LysM domain 173 215 IPR018392 -
Vimu10g02163 452 Pfam LysM domain 107 153 IPR018392 -
Vimu10g02163 452 Gene3D LysM domain 161 220 IPR036779 -
Vimu10g02163 452 Gene3D LysM domain 99 159 IPR036779 -
Vimu10g02163 452 ProSiteProfiles LysM domain profile. 171 214 IPR018392 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g02163 Vimu-Chr10 31805344 31807477 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g02163 15 427 LysM Receptor-like Protein (LYPs) Gene Family AT1G21880 65.144 0.0 532
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g02163 - - gmx:100777292 715.687
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g02163 10 31805344 31807477 Vimu10g02163 10 31805344 31807477 ECH