Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g02110 ATGGTTCCAGTTCAAGGGGAAGAAAAGGAGGGGAATTGGATTGAATGGGATAAAATGCATTCACATTTCAATCAAACTCCGTTCCATTTAAGTTTCATTCTGTTCCATTCGATACCTTTCATGAATCCTAACATAGGGAAGTTTATCTGCCCTTGCACTCATCGAGTTGTTTGGGCTGTACTGATATATGCGTTTCCCATTATTCTGGATGGAGTCTGGGATGAGCTGTACAAGGAGTGTGTTGAAGCTTTACAAGGTGGATTACTATTAGTGAAGAAAGATTTCAAAGCCATTAAAGAAGCATTGCAGGAAGCATTTCTCAAGGCAGACACGAGGTTATTAAAACGGCTTGAAATGAATGGAGAGGAGGATGAATCAGGTGCCACAGCAACTGCCATTTTCGTCGGAGATGATGAGCTTCTAATTTCACATATCGGTGATTCTTCTGCGGTTCTATGCAGATCTGGAAAAGCAGAAGTTCTGACTAGTCCTCACCGTCCATATGGGAGCAAAAAAACTTCTCTTGATGAAATTAGAAGAATAAGAGAAGCAGGTGGATGGATTAGCAACGGTAGAATTTGTGGAGACATTGCTGTATCTCGTGCATTTGGGGACTTGCGATTCAAAACCAAGAAGAATGAGTACGGATGCTGCAAAAAGGAGTTCAGGAAGGAAAATGGTCAGCAAAGTTCATCTCTCGGTATGTGGATTAAAGTTCCTTACTTTTTCTCCAATGCTGGTTGTGTTACATTAGCATTCAGTAAAAAGAATGGAGATAAGTTGTTTGCCTTGATTCATGTGCTTTTTGTACAGCTCAACAATGACTTGGTTGTAGCGTACCCTGATATTTATCAGGTAGCTCTTGGCTCAGATGCGGAATTTGTAGTATTAGCAACCGATGGCTTATGGGATTACATGAGCAGCTCAGAAGCAGTTTCTTTAGTTAGGGATCAACTACGAAAACATGGAAACATTCAGCTAGCATGTGAATCGCTTGCAGAAGCCGCTTTGGACCGACGTACACAGGATAATGTCAGCATTATAATTGCAGATTTAGGTGGTTTCAGGAGGACAGACTGGCAGAATGTGCCACTGGAGCAAAAAAATACTATAGTTGAGCTGGTTCAAGCTCTTGCTACCATTGGAATTGTGTCTTTTGGAATCTGGTTTTCATCACAGCTTTCTTTATAG 1191 0.4123 MVPVQGEEKEGNWIEWDKMHSHFNQTPFHLSFILFHSIPFMNPNIGKFICPCTHRVVWAVLIYAFPIILDGVWDELYKECVEALQGGLLLVKKDFKAIKEALQEAFLKADTRLLKRLEMNGEEDESGATATAIFVGDDELLISHIGDSSAVLCRSGKAEVLTSPHRPYGSKKTSLDEIRRIREAGGWISNGRICGDIAVSRAFGDLRFKTKKNEYGCCKKEFRKENGQQSSSLGMWIKVPYFFSNAGCVTLAFSKKNGDKLFALIHVLFVQLNNDLVVAYPDIYQVALGSDAEFVVLATDGLWDYMSSSEAVSLVRDQLRKHGNIQLACESLAEAALDRRTQDNVSIIIADLGGFRRTDWQNVPLEQKNTIVELVQALATIGIVSFGIWFSSQLSL 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g02110 396 SUPERFAMILY PP2C-like 74 354 IPR036457 -
Vimu10g02110 396 CDD PP2Cc 76 352 IPR001932 -
Vimu10g02110 396 Pfam Protein phosphatase 2C 92 345 IPR001932 -
Vimu10g02110 396 SMART PP2C_4 41 350 IPR001932 -
Vimu10g02110 396 Gene3D - 70 359 IPR036457 -
Vimu10g02110 396 ProSiteProfiles PPM-type phosphatase domain profile. 1 352 IPR001932 -
Vimu10g02110 396 PANTHER PROTEIN PHOSPHATASE 2C 90 350 IPR015655 GO:0004722|GO:0006470
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g02110 Vimu-Chr10 31024221 31027567 Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g02110 10 31024221 31027567 Vimu10g02110 10 31024221 31027567 ECH
Vimu10g02110 10 31024221 31027567 Vimu1g03052 1 42943784 42945465 PCT