Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g02103 ATGTTGGAGAGAAGGGCGAGGCCTCAGAAGGATCAAGCTTTGAACTGCCCAAGGTGCAATTCCACCAACACCAAATTCTGCTACTACAATAACTATAGCCTCTCCCAGCCAAGGTACTTTTGCAAGACATGTAGAAGGTATTGGACTGAGGGTGGTTCTCTCAGAAACGTTCCTGTTGGTGGTGGCTCTAGAAAGAACAAGAGATCAACAACAAAGAAGCTTCCTGATCTCACACCACCAAATTTCCCTCAATCAGCTTCTCAGGACCCTAAGATCCACCAAGGCCAAGACCTTAACTTAGCATACCCTCCAGCCGAGGACTATAACACTGTCTCTAAGTTCATCGAGGTTCCTTACAGCACGGAATTAGACAAGGGTACACTTCAAAACGCCACTTCCTCATCAACACCGTCTCAGTTGTCTGCCATGGAGCTTCTCAAGACCGGGATTGCTTCCTCAAGGGGTTTAAACTCCTTCATGCCAATGTATAATTCAACTGGGTTTCCTTTGCCAGACTTCAAGCCACCACCTGGCCTTAACTTCAGTCTAGAGGGCTTTGAAAATGGTTACGGGGGTCTTCAGGGAATTCAAGAGGGTCCTACTGGTGCAAGGATCTTGTTTCCTGTCGAGGATTTAAAGCAGCAGGTTCCAACCACAAATGAGTTCGATCAGCAGAATAGAAGTCATGGGGATTCATCTGGGTATTGGAATGGCATGTTAGGTGGAGGATCGTGGTAG 738 0.4715 MLERRARPQKDQALNCPRCNSTNTKFCYYNNYSLSQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKRSTTKKLPDLTPPNFPQSASQDPKIHQGQDLNLAYPPAEDYNTVSKFIEVPYSTELDKGTLQNATSSSTPSQLSAMELLKTGIASSRGLNSFMPMYNSTGFPLPDFKPPPGLNFSLEGFENGYGGLQGIQEGPTGARILFPVEDLKQQVPTTNEFDQQNRSHGDSSGYWNGMLGGGSW 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g02103 245 MobiDBLite consensus disorder prediction 218 233 - -
Vimu10g02103 245 MobiDBLite consensus disorder prediction 55 92 - -
Vimu10g02103 245 MobiDBLite consensus disorder prediction 73 92 - -
Vimu10g02103 245 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 5 132 IPR045174 GO:0003700|GO:0006355
Vimu10g02103 245 ProSitePatterns Zinc finger Dof-type signature. 16 52 IPR003851 GO:0003677|GO:0006355
Vimu10g02103 245 ProSiteProfiles Zinc finger Dof-type profile. 14 68 IPR003851 GO:0003677|GO:0006355
Vimu10g02103 245 MobiDBLite consensus disorder prediction 218 245 - -
Vimu10g02103 245 Pfam Dof domain, zinc finger 11 68 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g02103 Vimu-Chr10 30819338 30820105 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g02103 1 245 C2C2-Dof Transcription Factor Family AT3G61850 46.209 1.01e-62 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Vimu10g02103 zf-Dof 8.7e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g02103 - - gmx:778114 441.81