Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g01235 ATGGGGTTATCTTCTTTGCACGTCTGCATGGATTCATCAGATCATTGGTTGCAGGGCACAATTCACGAGGAGTCTGGAATGGATTCTTCTTCTTCACCCTCTGGGGACATGCTTACATGCTCAAGGCCCATGATAGAGAGGAGGCTAAGACCCCCACATGACCAAGCTTTAAAATGCCCCAGGTGTGACTCAACCCACACCAAGTTCTGCTACTACAACAACTACAGTCTCTCTCAGCCGAGGTACTTCTGCAAGACCTGCAGAAGGTACTGGACCAAAGGAGGCACTCTTAGGAACATTCCTGTTGGTGGAGGCTGCAGAAAGAACAAGAAAGTCTCTGCAAAAAAATCCAATGACCACCCATTAGTTAACAATCAAATTAGTCAAACACAGCCCCCACCCTCCTCCTACCATCATAACCCCAAAGACCTTCAACTCTCTTTTCCAGATGTACAATTTTCCCACCTCAGCAACTTGCTTGGGACGAATGCAGGATCACTGGGAAACCCTAGCTTTATGGAGGGTAAGTATGGTATTGGCATGATCGAGAACCCCAGGCCAATTGACTTCATGATGGAGAGCAAGTTGGAGGGCATAATTGGGAGTGGTAGTTCTAGGAATTTTGATTTTTTTGGAAATAGTGACATGGGCATGGGTGCTGGGCTAGGAGATATGCATGCTAATGCTCAAAATGGGTTGCCATCAAATTTTCACGGTCTTTGCCCCTCAGCTTTTGGTGGCATGTCTATGTCTCTTGATGGCAACAACACTGGCAATGGTGCTAATAACTACTTAATGGACTCTTGCCAACGCTTGATGCTGCCATATGATGCCAATGAAGACCATAATGCCTCAATTGATGTGAAGCCAAACCCTAAACAACTACTGTCCCTCGAATGGCAAGACCAGGGTTGCTCTGATGCTGGCAAAGACTCCTTTGGGTATCTCAACGGTCCAGGATCATGGACTGGCATGATGAACGGCTATGGATCTTCCACCACAAACCCTTTGGTCTAG 1017 0.469 MGLSSLHVCMDSSDHWLQGTIHEESGMDSSSSPSGDMLTCSRPMIERRLRPPHDQALKCPRCDSTHTKFCYYNNYSLSQPRYFCKTCRRYWTKGGTLRNIPVGGGCRKNKKVSAKKSNDHPLVNNQISQTQPPPSSYHHNPKDLQLSFPDVQFSHLSNLLGTNAGSLGNPSFMEGKYGIGMIENPRPIDFMMESKLEGIIGSGSSRNFDFFGNSDMGMGAGLGDMHANAQNGLPSNFHGLCPSAFGGMSMSLDGNNTGNGANNYLMDSCQRLMLPYDANEDHNASIDVKPNPKQLLSLEWQDQGCSDAGKDSFGYLNGPGSWTGMMNGYGSSTTNPLV 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g01235 338 ProSiteProfiles Zinc finger Dof-type profile. 57 111 IPR003851 GO:0003677|GO:0006355
Vimu10g01235 338 MobiDBLite consensus disorder prediction 108 139 - -
Vimu10g01235 338 Pfam Dof domain, zinc finger 54 111 IPR003851 GO:0003677|GO:0006355
Vimu10g01235 338 ProSitePatterns Zinc finger Dof-type signature. 59 95 IPR003851 GO:0003677|GO:0006355
Vimu10g01235 338 MobiDBLite consensus disorder prediction 118 139 - -
Vimu10g01235 338 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 44 207 IPR045174 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g01235 Vimu-Chr10 12364253 12365651 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g01235 1 338 C2C2-Dof Transcription Factor Family AT5G62940 42.092 1.26e-57 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Vimu10g01235 zf-Dof 1.8e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g01235 - - gmx:778107 588.186
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g00667 7 6673812 6675311 Vimu10g01235 10 12364253 12365651 PCT