Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g01055 ATGCTCCAAAATAAGGACCCTGCAATTAGGCTCTTCGGCCAGAAGATTGCCTTTTCTGGAGAACCCGACGCTCCGACCATTGCCGCCGCTCACACCCCCTCGCCACCGCCGCCGGTGGATGTTGTCAGAGACGCAGAAGAAGAAGGAGAAGAAGAAGTAGTAGATGACGACGTTGCTGACTCAGAGGCTGAAGATGATGACAACAGAGACAAGGATCCTGCAGAAGAAGTTAGTGAGAAAACGAAAGAAGCTGATCTTCCTCCAAATGCTGCAGACTCTAAGAACACCGCAGAGGGTCTTCAGAATCCAAACACACCTTCCATAGACGAAGAATCTGCAAAGTCAAAATCCAACAAGTCAGAAAACGATCAAACCGATCCAACCACAACAGGTGCTGCTACTGCAACCAACAACTCACTAAACAACAACAATAAAACGCTGAAAAAACCAGACAAAATTCTTCCTTGTCCTCGCTGCAATAGCATGGACACCAAGTTCTGTTACTACAACAACTACAATGTGAACCAGCCACGTTACTTCTGCAAAGCGTGCCAAAGGTACTGGACCGCCGGGGGCACCATGCGAAACGTGCCGGTGGGTGCAGGGAGGAGAAAGAATAAAAACTCAGCCTCTCACTATCGCCATATCACAATCTCTGAAGCACTTCAAGCTGCAAGAATCGATTCCCCAAACGGGACTCATCTTTTGAAGCCCAATGGGAGAGTCCTCAGCTTTGGTTTAGACCCTCCAATTTGTGATTCCATGGCATCAGTCCTGAACCTCGCAGAGAAGAAAACAAGAAACGGGTTTCACTCCATGGAGGATCAGAGAAACAAAGATGATGACTGCTCCAGTGCATCATCCATCACCGTTTCCAATGAAGAAAGTGGGAAAAGCAATTCACAAGAATCATTGGTGCCTAACAACAACAGTTTCATACATCATCATCATCACCATGTTCCGTGCATATCCACTGTTCCTTGGGCTTATCCTTGGAACTCCGGGGTTCCCTCAGCACCTGCTCTGTGCCCTCCAGGGTTTCCCATGTCGTTTTACCCTCATGCATTTTGGAACATTCCATGGTTTCCCACACACCATGCTGCCCCAGCTCCAAGGTCTCCGGGTTCTGGTCCAAATTCTCCCACTCTCGGGAAACACTCCAGGGACGATGACTCGGCGAAGCAAGAGCACGTCCACGAGGAACCCTCGAGGCAGAGAAACGGGTCTGTTTTGGTGCCCAAAACTTTGAGAATCGATGACCCCAGTGAGGCAGCCAAGAGTTCAATATGGGCAACTTTAGGGATCAAGAACGAGTGTGTGAGTGGGGGTGGCATGTTCAAAGGGTTCCAATCAAAGAAAGAAGAGAAAGAACGTGTCATGGAAACCTCTCCTGTGTTGAGGGCCAACCCTGCAGCCTTGTCTAGATCCCTTAACTTTCACGAGAACTCTTGA 1452 0.4897 MLQNKDPAIRLFGQKIAFSGEPDAPTIAAAHTPSPPPPVDVVRDAEEEGEEEVVDDDVADSEAEDDDNRDKDPAEEVSEKTKEADLPPNAADSKNTAEGLQNPNTPSIDEESAKSKSNKSENDQTDPTTTGAATATNNSLNNNNKTLKKPDKILPCPRCNSMDTKFCYYNNYNVNQPRYFCKACQRYWTAGGTMRNVPVGAGRRKNKNSASHYRHITISEALQAARIDSPNGTHLLKPNGRVLSFGLDPPICDSMASVLNLAEKKTRNGFHSMEDQRNKDDDCSSASSITVSNEESGKSNSQESLVPNNNSFIHHHHHHVPCISTVPWAYPWNSGVPSAPALCPPGFPMSFYPHAFWNIPWFPTHHAAPAPRSPGSGPNSPTLGKHSRDDDSAKQEHVHEEPSRQRNGSVLVPKTLRIDDPSEAAKSSIWATLGIKNECVSGGGMFKGFQSKKEEKERVMETSPVLRANPAALSRSLNFHENS 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g01055 483 MobiDBLite consensus disorder prediction 271 310 - -
Vimu10g01055 483 MobiDBLite consensus disorder prediction 122 148 - -
Vimu10g01055 483 MobiDBLite consensus disorder prediction 20 154 - -
Vimu10g01055 483 MobiDBLite consensus disorder prediction 94 111 - -
Vimu10g01055 483 MobiDBLite consensus disorder prediction 44 72 - -
Vimu10g01055 483 MobiDBLite consensus disorder prediction 73 87 - -
Vimu10g01055 483 MobiDBLite consensus disorder prediction 283 310 - -
Vimu10g01055 483 PANTHER CYCLIC DOF FACTOR 2 4 483 IPR045174 GO:0003700|GO:0006355
Vimu10g01055 483 ProSitePatterns Zinc finger Dof-type signature. 156 192 IPR003851 GO:0003677|GO:0006355
Vimu10g01055 483 MobiDBLite consensus disorder prediction 368 416 - -
Vimu10g01055 483 MobiDBLite consensus disorder prediction 384 404 - -
Vimu10g01055 483 ProSiteProfiles Zinc finger Dof-type profile. 154 208 IPR003851 GO:0003677|GO:0006355
Vimu10g01055 483 Pfam Dof domain, zinc finger 151 208 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g01055 Vimu-Chr10 9846925 9849436 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g01055 1 481 C2C2-Dof Transcription Factor Family AT3G47500 46.493 2.00e-122 363
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Vimu10g01055 zf-Dof 2.2e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g01055 - - gsj:114409713 684.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g00803 7 7975990 7978720 Vimu10g01055 10 9846925 9849436 ECH
Vimu11g02348 11 40843547 40846238 Vimu10g01055 10 9846925 9849436 ECH
Vimu10g01055 10 9846925 9849436 Vimu10g01055 10 9846925 9849436 ECH