Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g00854 ATGGCAGAGACAAAACCAGACACACCATTGATGCCACCGTCGTCGCGGAAGCTTCCAGATTTCAAGAAGTCCGTGAAATTGAAGTATGTGAAACTTGGTTATCATTACCTCATCACTCATGGCATGTACCTGTGTCTTTCCCCTCTGGTGGTGGTCATTGCTGCACAGCTCTCAACCTTTTCCGTGAAAGATCTCCATGACATTTGGGAGAATCTACAATACAATTTGATATCCGTCATTCTTTGCTCCACCATGATTGTATTTTTGTCCACACTATACATTATGACTCGTCCAAGACCCGTGTACCTTGTCAATTTCTCATGTTACAAGCCTGAAGAAGCTCGCAAATGCTCAAAGAAGATATTCATGGACCAGTCCAGGAGGAGTGGTTTTTTCACAGAGGAAAATCTTGAATTCCAGCGGAAGATTCTAGAGAGGGCTGGCCTTGGGGAAAGCACATACTTTCCAGAAGCTGTTCTCAATGATCCTCCCAACCCTTCAATGCAAGAGGCAAGAAAAGAGGCCGAGCTTGTCATGTTTGGTGCAATTGATGAGCTTTTTTCCAAGACTTTTGTGAAGCCTAAGGACATTGGAATTCTGATTGTGAATTGCAGCCTCTTCTGCCCCACGCCCTCACTTTCGGCAATGATCATCAATCATTATAAGCTTAGAGGGAACATAAAAAGCCTCAACCTTGGTGGAATGGGATGCAGTGCAGGTCTCATTTCGATTGATCTTGCTAAGGACCTTCTCCAAGTCCACCCCAATTCCTATGCATTGGTAGTTAGCACAGAAAACATCACCTTGAATTGGTACCCTGGGAATGACCGATCCAAGCTTGTTTCCAATTGTTTGTTCCGTATGGGAGGGGCTGCCATTCTGCTTTCCAACAAAAGCTCTGATAAAAGAAGATCCAAATATCGGCTGGTTGACACAGTTCGCACTAACAAAGCTTCTGATGACAAGTGCTTCGGCTGTGTTATCCAAGAGGAAGATTCCAATGGCAAGGTTGGTGTCACTTTGTCCAAAGATTTGATGGCAGTTGCTGGTGATGCTTTGAAAACAAACATCACCACATTGGGGCCTCTTGTCCTTCCAATGTCCGAACAACTACTATTCTTTGCCACGTTGGTTGGGAAGAAGGTTTTCAAGATGAAGATCAAGCCTTATATTCCAGACTTCAAGCTGGCTTTTGAGCACTTCTGCATCCATGCCGGAGGCAGAGCCGTGTTGGATGAACTTGAGAAGAACTTGCAGCTTTCTACTTGGCATATGGAGCCATCAAGGATGACACTTTACCGTTTTGGAAACACATCGAGCAGTTCTCTTTGGTATGAATTGGCTTACACAGAAGCGAAAGGGAGGATGAGGAAGGGTGATAGAACATGGCAGATAGCATTCGGTTCTGGATTCAAGTGCAACAGTGCAGTGTGGAAGGCTCTCAGAACCATCAACCCTGCCAAAGAGAAAAACCCTTGGATGGATGAGATCCACAATTTCCCAGTTGAAGTACCAAGAATTTCATCCTTCTAG 1533 0.4488 MAETKPDTPLMPPSSRKLPDFKKSVKLKYVKLGYHYLITHGMYLCLSPLVVVIAAQLSTFSVKDLHDIWENLQYNLISVILCSTMIVFLSTLYIMTRPRPVYLVNFSCYKPEEARKCSKKIFMDQSRRSGFFTEENLEFQRKILERAGLGESTYFPEAVLNDPPNPSMQEARKEAELVMFGAIDELFSKTFVKPKDIGILIVNCSLFCPTPSLSAMIINHYKLRGNIKSLNLGGMGCSAGLISIDLAKDLLQVHPNSYALVVSTENITLNWYPGNDRSKLVSNCLFRMGGAAILLSNKSSDKRRSKYRLVDTVRTNKASDDKCFGCVIQEEDSNGKVGVTLSKDLMAVAGDALKTNITTLGPLVLPMSEQLLFFATLVGKKVFKMKIKPYIPDFKLAFEHFCIHAGGRAVLDELEKNLQLSTWHMEPSRMTLYRFGNTSSSSLWYELAYTEAKGRMRKGDRTWQIAFGSGFKCNSAVWKALRTINPAKEKNPWMDEIHNFPVEVPRISSF 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g00854 510 SUPERFAMILY Thiolase-like 286 482 IPR016039 GO:0016746
Vimu10g00854 510 Pfam 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal 399 479 IPR013747 -
Vimu10g00854 510 PANTHER 3-KETOACYL-COA SYNTHASE 69 503 IPR012392 GO:0006633|GO:0016020|GO:0016747
Vimu10g00854 510 Pfam FAE1/Type III polyketide synthase-like protein 93 382 IPR013601 GO:0006633|GO:0016020|GO:0016747
Vimu10g00854 510 PIRSF Very_long_ch_3-ktacl-CoA_syn 20 510 IPR012392 GO:0006633|GO:0016020|GO:0016747
Vimu10g00854 510 Gene3D - 107 480 IPR016039 GO:0016746
Vimu10g00854 510 FunFam 3-ketoacyl-CoA synthase 111 480 - -
Vimu10g00854 510 CDD CHS_like 86 478 - -
Vimu10g00854 510 SUPERFAMILY Thiolase-like 85 305 IPR016039 GO:0016746
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g00854 Vimu-Chr10 7573552 7575084 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g00854 9 509 Miscellaneous Gene Families AT2G26640 82.435 0.0 882
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g00854 10 7573552 7575084 Vimu10g00854 10 7573552 7575084 ECH
Vimu7g00973 7 9505667 9507247 Vimu10g00854 10 7573552 7575084 PCT