Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g00834 ATGCAATCTCAAACTTCAGATACGTTTCCCTCTCACTGTCAAAATGAAACAATTTCCTGTTATGACCCAGCAGCATTTAACTACACCAGACCCTTTTCCATTCACTCTGAAAGCAACCCAACATGGAAACAACAAAACAACACTGACCTTCCTCCTTTGTCCTTTTTCCACTTTCCTTCTCCTCCCTTTGAAGACACTCATATTTCCTTCCAACAACACCACGATTTCCTCCTCCAGTTTCACCATAACCCTCCACCTCAAAACCCCGACCCTCAACTGGTTAGTCTTTCGGTGGAGACTTCTGCTAAGAAGAATATCCAAACCCCCAGAAAAAGACCTGGAAAGAGAGATAGACACAGCAAGATCAGCACCGCAGGGGGACTGAGGGATAGGAGAATGAGACTTTCCCTTGATGTTGCAAGGAGGTTTTTCGGTTTGCAAGATATGCTGGGCTTTGACAAAGCTAGCAAGACCGTGGAGTGGCTGCTGAACCAAGCAAAGGCTGAAATTAATCGTCTAGCGAAGGAGAAAAAGAAGCAGAAGAAGAGTGTTCACCGCAGTTGCTGCAGTGCTGGTTCGGAATGTGAAGAAGGTCTGTCTAGTCTTGATGAGGTTGCAGTGAGTAGAGATGAAGAAGAAGCAGGAGAAGAGAGAGTGGACAAAGTGATGAAGAGAAGGGTTAATCATTCTAGGAAGATCAGTGCATTCCATCCTCTTGCAAGGGAGTGCAGGGAAAGGGCAAGAGAGAGGGCAAGAGAGAGGACAAGAGAAAAGATGAGAAGTCGTGGCCTGGCTGAAGAATCAAAGCCATGTAGAGAGGAAGAAAATCAAGATCTCATCCAATTGGGTTCTTGGAAACCCTCAGAAACTGGAGAAGAATTTGTTACCAAGAGCCACAGTTTGCATCCTTCCTTGGACGTGATCACTGAGGGTAAAGAAGATATCTACTACGCAAAGGAGCATGATGATGATGATTCTTTGGTTATCTTGGGCAAATGGAGCCCCTCCTTGATCTTCAATAACTATGGATTTTCTCACGAAAATTTCAGTCCTTGGGAAAGCCATGGGAGGCCTAAAACAATCACATCCCAAATATTTGATGTGCCAACGGAAGTCTGCTATGTATTTCTTTACTTTCCTTTCAGAATTTAA 1152 0.4444 MQSQTSDTFPSHCQNETISCYDPAAFNYTRPFSIHSESNPTWKQQNNTDLPPLSFFHFPSPPFEDTHISFQQHHDFLLQFHHNPPPQNPDPQLVSLSVETSAKKNIQTPRKRPGKRDRHSKISTAGGLRDRRMRLSLDVARRFFGLQDMLGFDKASKTVEWLLNQAKAEINRLAKEKKKQKKSVHRSCCSAGSECEEGLSSLDEVAVSRDEEEAGEERVDKVMKRRVNHSRKISAFHPLARECRERARERARERTREKMRSRGLAEESKPCREEENQDLIQLGSWKPSETGEEFVTKSHSLHPSLDVITEGKEDIYYAKEHDDDDSLVILGKWSPSLIFNNYGFSHENFSPWESHGRPKTITSQIFDVPTEVCYVFLYFPFRI 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g00834 383 ProSiteProfiles R domain profile. 241 258 IPR017888 -
Vimu10g00834 383 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 101 285 IPR005333 GO:0003700
Vimu10g00834 383 Coils Coil 156 183 - -
Vimu10g00834 383 ProSiteProfiles TCP domain profile. 115 173 IPR017887 -
Vimu10g00834 383 MobiDBLite consensus disorder prediction 103 127 - -
Vimu10g00834 383 MobiDBLite consensus disorder prediction 250 273 - -
Vimu10g00834 383 Pfam TCP family transcription factor 114 261 IPR017887 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g00834 Vimu-Chr10 7430417 7432008 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g00834 90 255 TCP Transcription Factor Family AT3G18550 43.850 8.31e-31 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Vimu10g00834 TCP 7.8e-44 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g00834 10 7430417 7432008 Vimu10g00834 10 7430417 7432008 ECH
Vimu10g00834 10 7430417 7432008 Vimu7g00945 7 9170572 9172025 ECH
Vimu10g00834 10 7430417 7432008 Vimu6g01141 6 11780787 11781993 ECH