Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g00820 ATGCATGTTTTGTTTGAAGGACATATTTTACCCATGTATTGCACATCCCTCTTACAATGTTGTTTTGTTGATTACATTGAGAACAACATGTCAAAACTTAAGGTTAATCAACTTCGCCAATTAAGAGGCATTTTTGAAAAATTTGACACAGATTCTGATGGTAGCCTAACCAATTTGGAACTAGTCGCGCTCCTTCGATCATTAGGGCTAAAGCCTACGAGTGACCAAATCCATGCGTTATTAATGAACTTGGATTCGAATGGAAATGGATTTGTGGAGTTCGATGAGTTGGTGGATGCAATATTGCGTAACATGAGTGCAAAGATACTATTGAACCAAGAAATGTTGCTTGGGGTATTTAAATATTTTGATCGTGACGGAAATGGTTTTATAACAGCTGCAGAACTAGCAGGGGCAATGGCCAAAATGGGTCAACCCCTTACCTATAGAGAGCTTAGAGAGATGATCACAGAAGCAGACACAGATGGGGATGGTGTCATTAGCTTCAATGAGTTTGCCACTGTGATGGGTAGATCAGCCTCTGACTTCTTAGACTTTGCACTGTTGTAA 570 0.3982 MHVLFEGHILPMYCTSLLQCCFVDYIENNMSKLKVNQLRQLRGIFEKFDTDSDGSLTNLELVALLRSLGLKPTSDQIHALLMNLDSNGNGFVEFDELVDAILRNMSAKILLNQEMLLGVFKYFDRDGNGFITAAELAGAMAKMGQPLTYRELREMITEADTDGDGVISFNEFATVMGRSASDFLDFALL 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g00820 189 SUPERFAMILY EF-hand 30 176 IPR011992 -
Vimu10g00820 189 ProSitePatterns EF-hand calcium-binding domain. 49 61 IPR018247 -
Vimu10g00820 189 PANTHER CALCIUM BINDING PROTEIN 113 176 - -
Vimu10g00820 189 ProSitePatterns EF-hand calcium-binding domain. 160 172 IPR018247 -
Vimu10g00820 189 ProSiteProfiles EF-hand calcium-binding domain profile. 147 182 IPR002048 GO:0005509
Vimu10g00820 189 SMART efh_1 151 179 IPR002048 GO:0005509
Vimu10g00820 189 SMART efh_1 40 68 IPR002048 GO:0005509
Vimu10g00820 189 SMART efh_1 76 104 IPR002048 GO:0005509
Vimu10g00820 189 SMART efh_1 115 143 IPR002048 GO:0005509
Vimu10g00820 189 ProSitePatterns EF-hand calcium-binding domain. 124 136 IPR018247 -
Vimu10g00820 189 ProSiteProfiles EF-hand calcium-binding domain profile. 111 146 IPR002048 GO:0005509
Vimu10g00820 189 CDD EFh 40 101 IPR002048 GO:0005509
Vimu10g00820 189 Gene3D - 15 180 - -
Vimu10g00820 189 FunFam Probable calcium-binding protein CML15 26 106 - -
Vimu10g00820 189 Pfam EF-hand domain pair 116 176 IPR002048 GO:0005509
Vimu10g00820 189 Pfam EF-hand domain pair 40 100 IPR002048 GO:0005509
Vimu10g00820 189 ProSiteProfiles EF-hand calcium-binding domain profile. 36 71 IPR002048 GO:0005509
Vimu10g00820 189 ProSiteProfiles EF-hand calcium-binding domain profile. 72 107 IPR002048 GO:0005509
Vimu10g00820 189 ProSitePatterns EF-hand calcium-binding domain. 85 97 IPR018247 -
Vimu10g00820 189 CDD EFh 115 176 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g00820 Vimu-Chr10 7268037 7269190 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g00820 36 183 EF-hand Containing Proteins AT1G18530 70.946 3.96e-75 221
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g00820 10 7268037 7269190 Vimu10g00820 10 7268037 7269190 ECH