Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g00308 ATGGCTGCGACAATTCCTTTCTCTCTGCTGAGGAACTGCTCGCCATTGAAACTGGCAACACCTTTCGCTCGCAGAGCCTCCAACTTTAATCTCTTTCTCCCTCTTCAACCTCGCAGTTGTTACAGGTTGGGCTTTAGTACTCATGCCACGAACAATGAAGAGGCCGCAGCAAAAGCAGCTGCTGTTAATTTTGATAGTGAAGCTCCTACAATATTCGATAAGATCATAAATAAGGAAATACCTTCAAGTATTGTATACGAGGATGAAAAGGTTCTAGCATTTCGAGATATTAATCCACAGGCTCCAGTTCATGTTCTAGTCATTCCAAAATTTAGAGATGGATTAACACAACTCGGAAAGGCTGATAGTAGACATGGGGAAATATTGGGTGAACTTCTGTATGCTGCAAAAATAGTAGCCGAGAAAGAAGGTATCGTTGATGGATTTCGTGTTGTCATCAACAATGGTCCGAGTGCTTGTCAATCTGTGTATCATCTGCACTTGCATGTATTAGGTGGGAGACAGATGAATTGGCCACCAGGTTGA 546 0.4267 MAATIPFSLLRNCSPLKLATPFARRASNFNLFLPLQPRSCYRLGFSTHATNNEEAAAKAAAVNFDSEAPTIFDKIINKEIPSSIVYEDEKVLAFRDINPQAPVHVLVIPKFRDGLTQLGKADSRHGEILGELLYAAKIVAEKEGIVDGFRVVINNGPSACQSVYHLHLHVLGGRQMNWPPG 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g00308 181 CDD PKCI_related 69 173 - -
Vimu10g00308 181 FunFam Histidine triad nucleotide-binding protein 1 50 181 - -
Vimu10g00308 181 ProSitePatterns HIT domain signature. 154 172 IPR019808 -
Vimu10g00308 181 ProSiteProfiles HIT domain profile. 71 181 IPR011146 GO:0003824
Vimu10g00308 181 Gene3D - 49 181 IPR036265 -
Vimu10g00308 181 Pfam HIT domain 78 175 IPR011146 GO:0003824
Vimu10g00308 181 PANTHER HISTIDINE TRIAD HIT PROTEIN 47 181 IPR001310 -
Vimu10g00308 181 PRINTS Histidine triad family signature 92 110 IPR001310 -
Vimu10g00308 181 PRINTS Histidine triad family signature 71 87 IPR001310 -
Vimu10g00308 181 PRINTS Histidine triad family signature 161 171 IPR001310 -
Vimu10g00308 181 SUPERFAMILY HIT-like 69 180 IPR036265 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g00308 Vimu-Chr10 2079722 2082748 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g00308 10 2079722 2082748 Vimu10g00308 10 2079722 2082748 ECH